Repositories list

• ADAMIXTURE

  Public

  AI-sandbox/ADAMIXTURE’s past year of commit activity
  Fast population clustering with Adam-EM Optimization.

  machine-learninggeneticsexpectation-maximization+ 3

  machine-learninggeneticsexpectation-maximizationpopulation-geneticsadmixtureancestry-inference

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1•17•1•0•Updated Mar 28, 2026Mar 28, 2026

• pclai

  Public

  AI-sandbox/pclai’s past year of commit activity
  Point Cloud Local Ancestry Inference (PCLAI)

  localancestryhumanpangenomics

  localancestryhumanpangenomics

  0•5•0•0•Updated Mar 26, 2026Mar 26, 2026

• hprc-pclai

  Public

  AI-sandbox/hprc-pclai’s past year of commit activity
  Point Cloud Local Ancestry Inference (PCLAI) on HPRC Release 2 samples

  localancestryhumanpangenomics

  localancestryhumanpangenomics

  0•8•0•0•Updated Mar 26, 2026Mar 26, 2026

• Combine

  Public

  AI-sandbox/Combine’s past year of commit activity
  Python

  •

  MIT License

  •0•2•0•0•Updated Mar 19, 2026Mar 19, 2026

• ARGformer

  Public

  AI-sandbox/ARGformer’s past year of commit activity
  Python

  •

  Apache License 2.0

  •0•8•0•0•Updated Mar 18, 2026Mar 18, 2026

• snputils

  Public

  AI-sandbox/snputils’s past year of commit activity
  A Python library for processing genomes with ease

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •4•48•0•0•Updated Mar 7, 2026Mar 7, 2026

• zigo

  Public

  AI-sandbox/zigo’s past year of commit activity
  Zigo: Sex Checking by Zigosity Distributions

  Python

  •

  Apache License 2.0

  •0•1•0•0•Updated Feb 13, 2026Feb 13, 2026

• gnomix

  Public

  AI-sandbox/gnomix’s past year of commit activity
  A fast, scalable, and accurate local ancestry method.

  machine-learninggenomicsancestry

  machine-learninggenomicsancestry

  Python

  •

  Other

  •19•110•25•2•Updated Feb 11, 2026Feb 11, 2026

• mdPCA

  Public

  AI-sandbox/mdPCA’s past year of commit activity
  Python

  •0•0•0•0•Updated Dec 1, 2025Dec 1, 2025

• HyperFast

  Public

  AI-sandbox/HyperFast’s past year of commit activity
  HyperFast : Instant Classification for Tabular Data

  Python

  •

  Other

  •15•78•1•0•Updated Nov 26, 2025Nov 26, 2025

• iLTM

  Public
  iLTM: Integrated Large Tabular Model

  pythonmachine-learningdeep-learning+ 4

  pythonmachine-learningdeep-learningtabular-datapytorchmeta-learningpretraining

  Python

  •

  Apache License 2.0

  •0•18•0•0•Updated Nov 21, 2025Nov 21, 2025

• neural-admixture

  Public
  Rapid population clustering with autoencoders

  machine-learninggenomicspopulation-genetics+ 2

  machine-learninggenomicspopulation-geneticsadmixtureancestry-inference

  Python

  •11•87•5•0•Updated Sep 29, 2025Sep 29, 2025

• FSL-Net

  Public
  Python

  •

  Other

  •0•1•1•0•Updated Jun 5, 2025Jun 5, 2025

• SALAI-Net

  Public
  Python

  •

  Other

  •2•16•2•0•Updated Mar 24, 2025Mar 24, 2025

• aegen

  Public
  Autoencoders for genomic data compression, classification, imputation, phasing and simulation.

  compressionsimulationclassification+ 2

  compressionsimulationclassificationimputationphasing

  Python

  •

  Other

  •2•5•0•0•Updated Mar 3, 2025Mar 3, 2025

• asPopGenStats

  Public
  Ancestry-specific tool for calculating population genetics statistics from Gnomix output

  Python

  •0•5•0•0•Updated Jul 8, 2024Jul 8, 2024

• DataFix

  Public
  Jupyter Notebook

  •

  Other

  •3•9•0•0•Updated Feb 1, 2024Feb 1, 2024

• PopGenAdapt

  Public
  Semi-Supervised Domain Adaptation for Genotype-to-Phenotype Prediction in Underrepresented Populations

  Python

  •0•5•0•0•Updated Jan 11, 2024Jan 11, 2024

• MergeGenome

  Public
  Python

  •

  Other

  •0•0•0•0•Updated Jan 2, 2024Jan 2, 2024

• archetypal-analysis

  Public
  Python

  •1•15•1•1•Updated Dec 7, 2023Dec 7, 2023

• completion

  Public
  Python

  •1•11•0•2•Updated Sep 27, 2023Sep 27, 2023

• XGMix

  Public
  Jupyter Notebook

  •2•15•0•5•Updated Nov 22, 2022Nov 22, 2022

• adversarial-attack-genotype

  Public
  Official code for "Adversarial Attacks on Genotype Sequences" paper

  Jupyter Notebook

  •0•2•0•0•Updated Nov 9, 2022Nov 9, 2022

• intro_to_machine_learning

  Public
  SCSS

  •

  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Aug 10, 2022Aug 10, 2022

• GMMN-genotype-simulation

  Public
  This repository includes a python implementation of a GMMN to generate genotypes of a particular ancestry

  Python

  •0•1•0•0•Updated May 5, 2022May 5, 2022

• genTools

  Public
  genomic tools

  Python

  •0•1•0•0•Updated Apr 11, 2022Apr 11, 2022

• LAI-Net

  Public
  Official implementation of LAI-Net

  Python

  •2•5•2•0•Updated Apr 11, 2022Apr 11, 2022

• hyperPop

  Public
  Jupyter Notebook

  •

  MIT License

  •0•2•0•0•Updated Feb 22, 2022Feb 22, 2022

• genTopo

  Public
  genetic topology, TDA on DNA

  Jupyter Notebook

  •0•1•0•0•Updated Feb 24, 2021Feb 24, 2021

• XGMix-models

  Public
  0•2•0•0•Updated Jul 22, 2020Jul 22, 2020