All

30 repositories

ADAMIXTURE
Public
Fast population clustering with Adam-EM Optimization.
machine-learning genetics expectation-maximization
machine-learning genetics expectation-maximization population-genetics admixture ancestry-inference
Python
•
BSD 3-Clause "New" or "Revised" License
•1•17•1•0•Updated Mar 30, 2026Mar 30, 2026
zigo
Public
Zigo: Sex Checking by Zigosity Distributions
Python
•
Apache License 2.0
•0•4•0•0•Updated Mar 30, 2026Mar 30, 2026
pclai
Public
Point Cloud Local Ancestry Inference (PCLAI)
localancestry humanpangenomics
localancestry humanpangenomics
0•5•0•0•Updated Mar 26, 2026Mar 26, 2026
hprc-pclai
Public
Point Cloud Local Ancestry Inference (PCLAI) on HPRC Release 2 samples
localancestry humanpangenomics
localancestry humanpangenomics
0•8•0•0•Updated Mar 26, 2026Mar 26, 2026
Combine
Public
Python
•
MIT License
•0•2•0•0•Updated Mar 19, 2026Mar 19, 2026
ARGformer
Public
Python
•
Apache License 2.0
•0•8•0•0•Updated Mar 18, 2026Mar 18, 2026
snputils
Public
A Python library for processing genomes with ease
Python
•
BSD 3-Clause "New" or "Revised" License
•4•48•0•0•Updated Mar 7, 2026Mar 7, 2026
gnomix
Public
A fast, scalable, and accurate local ancestry method.
machine-learning genomics ancestry
machine-learning genomics ancestry
Python
•
Other
•19•110•25•2•Updated Feb 11, 2026Feb 11, 2026
mdPCA
Public
Python
•0•0•0•0•Updated Dec 1, 2025Dec 1, 2025
HyperFast
Public
HyperFast : Instant Classification for Tabular Data
Python
•
Other
•15•78•1•0•Updated Nov 26, 2025Nov 26, 2025
iLTM
Public
iLTM: Integrated Large Tabular Model
python machine-learning deep-learning
python machine-learning deep-learning tabular-data pytorch meta-learning pretraining
Python
•
Apache License 2.0
•0•18•0•0•Updated Nov 21, 2025Nov 21, 2025
neural-admixture
Public
Rapid population clustering with autoencoders
machine-learning genomics population-genetics
machine-learning genomics population-genetics admixture ancestry-inference
Python
•11•87•5•0•Updated Sep 29, 2025Sep 29, 2025
FSL-Net
Public
Python
•
Other
•0•1•1•0•Updated Jun 5, 2025Jun 5, 2025
SALAI-Net
Public
Python
•
Other
•2•16•2•0•Updated Mar 24, 2025Mar 24, 2025
aegen
Public
Autoencoders for genomic data compression, classification, imputation, phasing and simulation.
compression simulation classification
compression simulation classification imputation phasing
Python
•
Other
•2•6•0•0•Updated Mar 3, 2025Mar 3, 2025
asPopGenStats
Public
Ancestry-specific tool for calculating population genetics statistics from Gnomix output
Python
•0•5•0•0•Updated Jul 8, 2024Jul 8, 2024
DataFix
Public
Jupyter Notebook
•
Other
•3•9•0•0•Updated Feb 1, 2024Feb 1, 2024
PopGenAdapt
Public
Semi-Supervised Domain Adaptation for Genotype-to-Phenotype Prediction in Underrepresented Populations
Python
•0•5•0•0•Updated Jan 11, 2024Jan 11, 2024
MergeGenome
Public
Python
•
Other
•0•0•0•0•Updated Jan 2, 2024Jan 2, 2024
archetypal-analysis
Public
Python
•1•15•1•1•Updated Dec 7, 2023Dec 7, 2023
completion
Public
Python
•1•11•0•2•Updated Sep 27, 2023Sep 27, 2023
XGMix
Public
Jupyter Notebook
•2•15•0•5•Updated Nov 22, 2022Nov 22, 2022
adversarial-attack-genotype
Public
Official code for "Adversarial Attacks on Genotype Sequences" paper
Jupyter Notebook
•0•2•0•0•Updated Nov 9, 2022Nov 9, 2022
intro_to_machine_learning
Public
SCSS
•
Creative Commons Zero v1.0 Universal
•0•0•0•0•Updated Aug 10, 2022Aug 10, 2022
GMMN-genotype-simulation
Public
This repository includes a python implementation of a GMMN to generate genotypes of a particular ancestry
Python
•0•1•0•0•Updated May 5, 2022May 5, 2022
genTools
Public
genomic tools
Python
•0•1•0•0•Updated Apr 11, 2022Apr 11, 2022
LAI-Net
Public
Official implementation of LAI-Net
Python
•2•5•2•0•Updated Apr 11, 2022Apr 11, 2022
hyperPop
Public
Jupyter Notebook
•
MIT License
•0•2•0•0•Updated Feb 22, 2022Feb 22, 2022
genTopo
Public
genetic topology, TDA on DNA
Jupyter Notebook
•0•1•0•0•Updated Feb 24, 2021Feb 24, 2021
XGMix-models
Public
0•2•0•0•Updated Jul 22, 2020Jul 22, 2020

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AI-sandbox

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30 repositories

ADAMIXTURE

zigo

pclai

hprc-pclai

Combine

ARGformer

snputils

gnomix

mdPCA

HyperFast

iLTM

neural-admixture

FSL-Net

SALAI-Net

aegen

asPopGenStats

DataFix

PopGenAdapt

MergeGenome

archetypal-analysis

completion

XGMix

adversarial-attack-genotype

intro_to_machine_learning

GMMN-genotype-simulation

genTools

LAI-Net

hyperPop

genTopo

XGMix-models

All

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Repositories list

30 repositories