Repositories list

• IF_scDNA_analysis

  Public
  Analyze single-cell DNA data synthesized by Instrument Free method in two-cell experiment.

  Jupyter Notebook

  •0•1•0•0•Updated Mar 11, 2025Mar 11, 2025

• MissonBioTools

  Public
  Python

  •0•0•0•0•Updated Jan 28, 2022Jan 28, 2022

• Mass_spec_image_UMAP

  Public
  The scripts here are used to generate the UMAP clustering based on the data of mass spectrum imaging (MSI) by using R and MATLAB.

  MATLAB

  •

  Apache License 2.0

  •0•3•0•0•Updated Dec 28, 2021Dec 28, 2021

• DAb-seq

  Public
  DAb-seq: combined single-cell DNA genotyping and protein quantification.

  Jupyter Notebook

  •

  Apache License 2.0

  •3•3•1•0•Updated Mar 16, 2021Mar 16, 2021

• ModularGelBeads

  Public
  Scripts corresponding to the manuscript "Modular barcode beads for microfluidic single cell genomics"

  Jupyter Notebook

  •

  MIT License

  •0•2•0•0•Updated Aug 29, 2020Aug 29, 2020

• sorter-code

  Public
  Code for droplet sorting station.

  LabVIEW

  •4•0•0•0•Updated Jan 15, 2020Jan 15, 2020

• Pump-Control-Program

  Public
  Program for controlling New Era syringe pumps at drop stations.

  Python

  •4•6•1•0•Updated May 17, 2018May 17, 2018

• SiC-seq

  Public
  Scripts used in the 2017 SiC-seq paper

  Python

  •3•3•3•0•Updated Nov 9, 2017Nov 9, 2017

• Abseq

  Public
  Scripts used in the 2016 Abseq paper

  Python

  •0•0•0•0•Updated Sep 12, 2016Sep 12, 2016

• SMDB-scripts

  Public
  Scripts used in SMDB-paper

  Python

  •0•0•0•0•Updated Feb 15, 2016Feb 15, 2016

• Barcoding

  Public
  Tools for evaluating quality of barcoding runs, filtering out low quality data, and counteracting PCR noise

  Python

  •0•5•0•0•Updated Aug 5, 2015Aug 5, 2015