BioGenies

All

31 repositories

BioGenies.github.io
Public
R
•1•0•0•0•Updated Feb 23, 2026Feb 23, 2026
amyloid-database-list
Public
database databases interaction aggregation aprs amyloid-fibrils prion prions idps amyloidosis
HTML
•0•0•0•0•Updated Feb 19, 2026Feb 19, 2026
MetaboCrates
Public
R
•0•1•1•0•Updated Dec 31, 2025Dec 31, 2025
Deepskim
Public
Jupyter Notebook
•0•0•0•0•Updated Oct 13, 2025Oct 13, 2025
adhesiomeR
Public
0•0•0•0•Updated Jul 3, 2025Jul 3, 2025
countfitteR
Public
cancer cancer-imaging-research count-data count-distribution foci
CSS
•4•4•0•0•Updated Jul 1, 2025Jul 1, 2025
metabocrates-ws
Public
GNU General Public License v3.0
•0•0•0•0•Updated Jun 18, 2025Jun 18, 2025
llps-prediction-list
Public
R
•0•0•0•0•Updated May 26, 2025May 26, 2025
seminar
Public
HTML
•5•8•0•0•Updated Mar 18, 2025Mar 18, 2025
tidysq
Public
tidy processing of biological sequences in R
bioinformatics r s3 tidyverse rstats bioconductor fasta tidy sequences biological-sequences
C++
•2•44•52•0•Updated Jan 8, 2025Jan 8, 2025
peptide-prediction-list
Public
Collects software dedicated to predicting specific properties of peptides
machine-learning bioinformatics deep-learning awesome-list peptide-identification peptides prediction-model antimicrobial-peptides neuropeptides cell-penetrating-peptides
Shell
•9•66•1•0•Updated Dec 17, 2024Dec 17, 2024
imputomics
Public
shiny webserver imputation metabolomics amputation missing-values
R
•3•15•7•0•Updated Nov 7, 2024Nov 7, 2024
kmerFilters
Public
Tools for filtering k-mer data
genomics proteomics k-mer peptide-identification n-gram
R
•1•0•0•0•Updated Sep 14, 2024Sep 14, 2024
AMPBenchmark
Public
R
•0•10•0•0•Updated Jul 29, 2024Jul 29, 2024
imputomics-ws
Public
GNU General Public License v3.0
•0•0•0•0•Updated May 16, 2024May 16, 2024
PlastoGram-analysis
Public
HTML
•0•0•0•0•Updated May 24, 2023May 24, 2023
PlastoGram
Public
Predicts subplastid localization of proteins along with sequence origin (plastid- or nuclear-encoded).
bioinformatics random-forest r-package hmmer chloroplast plastid subchloroplast-localization subplastid-localization hmm-profile
R
•0•1•0•0•Updated May 24, 2023May 24, 2023
MetaboModelleR
Public
R
•2•3•5•1•Updated Feb 11, 2023Feb 11, 2023
NegativeDatasets
Public
Benchmarks in antimicrobial peptide prediction are biased due to the selection of negative data.
benchmarking machine-learning r peptides antimicrobial-peptides negative-sampling
HTML
•0•1•0•0•Updated Aug 25, 2022Aug 25, 2022
NegativeDatasetsArchitectures
Public
Python
•0•0•0•0•Updated Aug 22, 2022Aug 22, 2022
golem-modules-example
Public
Example of golem app with simple modules from biogenies seminar
R
•0•0•0•0•Updated Jun 28, 2022Jun 28, 2022
SLOPE
Public
Sorted L1 Penalized Estimation
R
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GNU General Public License v3.0
•11•0•2•0•Updated Apr 14, 2022Apr 14, 2022
critical-assessment-list
Public
0•0•0•0•Updated Sep 8, 2021Sep 8, 2021
tidysqadv
Public
advanced algorithms on biological sequences
C++
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GNU General Public License v3.0
•0•1•0•0•Updated May 29, 2021May 29, 2021
shinydetails
Public
R
•1•4•12•0•Updated Feb 24, 2021Feb 24, 2021
CancerGram
Public
Predicts anticancer peptides using random forests trained on the n-gram encoded peptides. The implemented algorithm can be accessed from both the command line a…
bioinformatics r-package k-mer peptide-identification random-forests n-gram anticancer-peptides
R
•0•4•0•0•Updated Nov 19, 2020Nov 19, 2020
CancerGram-analysis
Public
HTML
•0•1•0•0•Updated Nov 5, 2020Nov 5, 2020
BiolettaBillas
Public
Biosława Biospodarek, known by her stage name Bioletta Billas, was a Polish and international cabaret star, R package developer, actress, imposter and songwrite…
R
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GNU General Public License v3.0
•0•6•0•0•Updated Nov 3, 2020Nov 3, 2020
CancerGramModel
Public
R
•0•1•0•0•Updated Oct 8, 2020Oct 8, 2020
tidypkg
Public
tidypkg seamlessly supports good practices in the package development for R.
R
•0•1•0•0•Updated Oct 1, 2020Oct 1, 2020