BioJulia

All

90 repositories

BioTutorials
Public
Tutorial Notebooks of BioJulia
julia
SCSS
•8•38•4•2•Updated Feb 26, 2026Feb 26, 2026
BioAlignments.jl
Public
Sequence alignment tools
bam-files bioinformatics biology high-throughput-sequencing dna-sequences sequence-alignment sequence-analysis biojulia smith-waterman-alignment sam-files
Julia
•
MIT License
•25•64•23•2•Updated Feb 23, 2026Feb 23, 2026
BioStructures.jl
Public
A Julia package to read, write and manipulate macromolecular structures
bioinformatics biology structural-biology pdb julia protein-structure structural-bioinformatics biojulia
Julia
•
Other
•24•106•9•2•Updated Feb 23, 2026Feb 23, 2026
CIGARStrings.jl
Public
Read and write Concise Idiosyncratic Gapped Alignment Reports.
Julia
•
MIT License
•0•1•1•0•Updated Feb 20, 2026Feb 20, 2026
XAMAuxData.jl
Public
Read auxiliary data fields in SAM, GFA and PAF formats
Julia
•
MIT License
•0•3•0•1•Updated Feb 20, 2026Feb 20, 2026
BGZFLib.jl
Public
Read and write BGZF files
Julia
•
MIT License
•0•4•0•0•Updated Feb 20, 2026Feb 20, 2026
BufferIO.jl
Public
The buffer is the interface
Julia
•
MIT License
•0•20•6•1•Updated Feb 20, 2026Feb 20, 2026
PairwiseMappingFormat.jl
Public
Parser for the PAF format in bioinformatics
Julia
•
MIT License
•0•3•0•0•Updated Feb 20, 2026Feb 20, 2026
MemoryViews.jl
Public
Simple, low-level views into memory in Julia
Julia
•
MIT License
•1•24•1•0•Updated Feb 20, 2026Feb 20, 2026
biojulia.github.io
Public
Julia
•
MIT License
•4•6•5•0•Updated Jan 29, 2026Jan 29, 2026
posts
Public
Blog posts for the biojulia website
bioinformatics biology julia
Julia
•5•8•6•1•Updated Jan 15, 2026Jan 15, 2026
BioJuliaTemplate.jl
Public
Template package for BioJulia
Julia
•
MIT License
•0•0•0•1•Updated Jan 13, 2026Jan 13, 2026
SingleCellProjections.jl
Public
Analysis of Single Cell Expression data in Julia
Julia
•
Other
•4•24•4•2•Updated Jan 13, 2026Jan 13, 2026
BioSequences.jl
Public
Biological sequences for the julia language
bioinformatics biology biological-sequences biojulia
Julia
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MIT License
•51•162•19•7•Updated Jan 8, 2026Jan 8, 2026
Kmers.jl
Public
Efficient types and methods for K-mer biosequences
Julia
•
MIT License
•7•31•3•2•Updated Jan 5, 2026Jan 5, 2026
BED.jl
Public
bioinformatics bed-format
Julia
•
MIT License
•7•6•3•3•Updated Dec 28, 2025Dec 28, 2025
Automa.jl
Public
A julia code generator for regular expressions
julia regular-expression
Julia
•
Other
•16•198•9•2•Updated Dec 28, 2025Dec 28, 2025
BioMakie.jl
Public
Plotting and interface tools for biology.
Julia
•
MIT License
•5•69•4•12•Updated Dec 11, 2025Dec 11, 2025
FormatSpecimens.jl
Public
Biological file format specimens for testing packages, and functions to assist in testing.
Julia
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Other
•3•15•0•0•Updated Nov 18, 2025Nov 18, 2025
GenomicAnnotations.jl
Public
bioinformatics gff3 biology julia genbank genes genome-annotation
Julia
•
MIT License
•4•18•1•0•Updated Nov 12, 2025Nov 12, 2025
KWayMerges.jl
Public
Implementation of k-way merge algorithms in Julia
Julia
•
MIT License
•0•4•1•1•Updated Jul 11, 2025Jul 11, 2025
TwoBit.jl
Public
Support for working with 2Bit formatted sequence data files
Julia
•
MIT License
•3•11•2•1•Updated Jul 2, 2025Jul 2, 2025
Indexes.jl
Public
tabix
Julia
•
MIT License
•4•3•2•4•Updated Apr 27, 2025Apr 27, 2025
XAM.jl
Public
Parse and process SAM and BAM formatted files
bam-files bioinformatics sam bam biojulia sam-files sam-format bam-format
Julia
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MIT License
•14•29•23•5•Updated Apr 26, 2025Apr 26, 2025
BioSymbols.jl
Public
Nucleic and amino acid primitive types
bioinformatics biology computational-biology biological-data-analysis amino-acids nucleotides nucleic-acids biojulia
Julia
•
MIT License
•14•34•3•1•Updated Apr 25, 2025Apr 25, 2025
ProteinSecondaryStructures.jl
Public
Wrapper to protein secondary structure calculation packages
Julia
•
MIT License
•1•13•0•0•Updated Apr 3, 2025Apr 3, 2025
NCBIBlast.jl
Public
Thin wrapper around NCBI's BLAST+ CLI https://www.ncbi.nlm.nih.gov/books/NBK569856/
Julia
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MIT License
•2•6•1•1•Updated Mar 10, 2025Mar 10, 2025
BioMarkovChains.jl
Public
Representing biological sequences as Markov chains
bioinformatics biology julia markov-chain dna julialang
Julia
•
MIT License
•2•9•0•1•Updated Dec 9, 2024Dec 9, 2024
PopGen.jl
Public
Population Genetics in Julia
snps genomics genetics structure popgen fst microsatellites
Julia
•
MIT License
•17•53•4•1•Updated Nov 26, 2024Nov 26, 2024
PopGenCore.jl
Public
Core utilities for PopGen.jl, including the PopData type and file IO
Julia
•
MIT License
•2•6•3•0•Updated Nov 26, 2024Nov 26, 2024