BiocPy

All

39 repositories

BiocFrame
Public
Bioconductor-like data frames
dataframe
dataframe
Python
•
MIT License
•3•4•0•0•Updated Mar 16, 2026Mar 16, 2026
BiocSetup
Public
Quickly setup new Python packages
Python
•
MIT License
•0•2•1•0•Updated Mar 16, 2026Mar 16, 2026
BiocUtils
Public
Miscellaneous utilities for BiocPy, mostly to mimic base functionality in R.
Python
•
MIT License
•0•1•3•5•Updated Mar 16, 2026Mar 16, 2026
HDF5Array
Public
HDF5 File-backed arrays for Python
hdf5 delayedarray
hdf5 delayedarray
Python
•
MIT License
•0•0•0•0•Updated Mar 16, 2026Mar 16, 2026
GenomicRanges
Public
Container class to represent genomic locations and support genomic analysis
genomicranges
genomicranges
Python
•
MIT License
•4•26•1•0•Updated Mar 16, 2026Mar 16, 2026
IRanges
Public
IRanges in Python
interval-arithmetic iranges
interval-arithmetic iranges
Python
•
MIT License
•0•3•0•0•Updated Mar 16, 2026Mar 16, 2026
SingleCellExperiment
Public
Container class for single-cell experiments
singlecellexperiment
singlecellexperiment
Python
•
MIT License
•2•9•0•0•Updated Mar 16, 2026Mar 16, 2026
MultiAssayExperiment
Public
Container class to represent and manage multi-omics genomic experiments
multiassayexperiment
multiassayexperiment
Python
•
MIT License
•1•6•0•0•Updated Mar 16, 2026Mar 16, 2026
SpatialFeatureExperiment
Public
Python
•
MIT License
•0•1•2•0•Updated Mar 16, 2026Mar 16, 2026
SummarizedExperiment
Public
Container class for genomic experiments
summarizedexperiment
summarizedexperiment
Python
•
MIT License
•2•7•3•0•Updated Mar 16, 2026Mar 16, 2026
SpatialExperiment
Public
Container for Spatial Experiments
spatial-data
spatial-data
Python
•
MIT License
•0•3•13•1•Updated Mar 16, 2026Mar 16, 2026
TileDBArray
Public
TileDB backed delayed arrays for Python
tiledb delayedarray
tiledb delayedarray
Python
•
MIT License
•0•0•1•0•Updated Mar 16, 2026Mar 16, 2026
biostrings
Public
Python
•
MIT License
•0•1•0•0•Updated Mar 16, 2026Mar 16, 2026
compressed-lists
Public
Memory-efficient container for list-like objects
Python
•
MIT License
•0•0•0•0•Updated Mar 16, 2026Mar 16, 2026
pyBiocFileCache
Public
Python implementation of the BiocFileCache R package
cache
cache
Python
•
MIT License
•2•1•0•0•Updated Mar 16, 2026Mar 16, 2026
mopsy
Public
Matrix operations
numpy matrix scipy
numpy matrix scipy
Python
•
MIT License
•1•0•1•0•Updated Mar 16, 2026Mar 16, 2026
rds2py
Public
Read RDS files, in Python
python r
python r
Python
•
MIT License
•4•27•1•0•Updated Mar 16, 2026Mar 16, 2026
txdb
Public
Access TxDB Annotation objects
genome-annotation genomicranges txdb
genome-annotation genomicranges txdb
Python
•
MIT License
•0•1•0•0•Updated Mar 16, 2026Mar 16, 2026
scrnaseq
Public
Collection of public single-cell RNA-seq datasets
Python
•
MIT License
•1•3•0•0•Updated Mar 16, 2026Mar 16, 2026
bioRAT
Public
Python
•
MIT License
•0•0•0•1•Updated Mar 16, 2026Mar 16, 2026
Biocborn
Public
bioc objects + seaborn
Python
•
MIT License
•0•1•0•1•Updated Mar 16, 2026Mar 16, 2026
wobbegong
Public
Range-requests on Bioc objects
Python
•
MIT License
•0•0•0•1•Updated Feb 11, 2026Feb 11, 2026
ensembldb
Public
Access EnsemblDb from AnnotationHub
Python
•
MIT License
•0•1•0•0•Updated Jan 21, 2026Jan 21, 2026
biocpy.github.io
Public
CSS
•0•0•0•0•Updated Jan 14, 2026Jan 14, 2026
experimenthub
Public
Access ExperimentHub resources
Python
•
MIT License
•0•0•0•0•Updated Jan 8, 2026Jan 8, 2026
.github
Public
0•0•0•0•Updated Jan 6, 2026Jan 6, 2026
orgdb
Public
Access OrgDb Annotation objects
genome-annotation genomicranges orgdb
genome-annotation genomicranges orgdb
Python
•
MIT License
•0•0•0•0•Updated Jan 6, 2026Jan 6, 2026
DelayedArray
Public
DelayedArrays, in Python
delayedarray
delayedarray
Python
•
MIT License
•0•1•2•0•Updated Dec 13, 2025Dec 13, 2025
assorthead
Public
Assorted C++ headers, vendored into a Python package.
Python
•
MIT License
•0•0•0•0•Updated Dec 13, 2025Dec 13, 2025
test-new-pkg
Public archive
Python
•
MIT License
•0•0•0•0•Updated Oct 30, 2025Oct 30, 2025