Repositories list

• pycroglia

  Public
  A Python-based toolkit for quantitative 3D microglia morphology analysis

  pythonimage-processingcell-biology

  pythonimage-processingcell-biology

  Python

  •

  MIT License

  •0•4•13•0•Updated Mar 24, 2026Mar 24, 2026

• CGK-Laboratory.github.io

  Public
  Repository for the lab website

  HTML

  •

  BSD 3-Clause "New" or "Revised" License

  •1•1•0•1•Updated Feb 25, 2026Feb 25, 2026

• ci_pipe

  Public
  Highly configurable and customizable pipeline for calcium imaging analysis

  Python

  •

  MIT License

  •0•1•1•1•Updated Feb 19, 2026Feb 19, 2026

• CellSelect-3DMorph

  Public
  3DMorph is a MATLAB-based script that analyzes microglia morphology from 3D data. Outputs include cell and territorial volume, branch length, and number of bran…

  neurosciencemicroglial-morphology

  neurosciencemicroglial-morphology

  MATLAB

  •

  MIT License

  •0•5•1•0•Updated Feb 12, 2026Feb 12, 2026

• calcium_imaging_analysis_pipeline

  Public
  CGK-Laboratory calcium imaging analysis pipeline

  neurosciencecalcium-imaging

  neurosciencecalcium-imaging

  Jupyter Notebook

  •

  MIT License

  •1•5•2•0•Updated Sep 2, 2025Sep 2, 2025

• .github

  Public
  0•0•0•0•Updated Nov 14, 2024Nov 14, 2024