Repositories list

• patchr

  Public
  Python

  •

  MIT License

  •1•2•0•0•Updated Mar 12, 2026Mar 12, 2026

• OTalign

  Public
  OTalign: Protein sequence alignment for remote homologs using Protein Language Models and Unbalanced Optimal Transport.

  bioinformaticsdeep-learningcomputational-biology+ 4

  bioinformaticsdeep-learningcomputational-biologyoptimal-transportprotein-alignmentremote-homology-detectionprotein-language-models

  Python

  •0•3•0•0•Updated Mar 9, 2026Mar 9, 2026

• pLM-BLAST

  Public
  Detection of remote homology by comparison of protein language model representations

  Python

  •

  MIT License

  •8•0•0•0•Updated Feb 27, 2026Feb 27, 2026

• EBA

  Public
  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Feb 27, 2026Feb 27, 2026

• dedal-fork

  Public
  Python

  •0•0•0•0•Updated Feb 27, 2026Feb 27, 2026

• proposals

  Public
  Python

  •0•0•0•0•Updated Feb 6, 2026Feb 6, 2026

• Protenix-MPS

  Public
  A trainable PyTorch reproduction of AlphaFold 3. (MPS version)

  Python

  •

  Apache License 2.0

  •237•0•0•0•Updated Jan 10, 2026Jan 10, 2026

• recent-pdb

  Public
  Recent Protein Data Bank Entries

  Python

  •0•0•0•0•Updated Jan 7, 2026Jan 7, 2026

• DeepFold-PLM

  Public
  DeepFold-PLM

  Python

  •

  MIT License

  •0•10•0•0•Updated Nov 14, 2025Nov 14, 2025

• cpm_kernels

  Public
  Python

  •

  Apache License 2.0

  •9•0•0•0•Updated Sep 19, 2025Sep 19, 2025

• Pymol-Plugins

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Aug 6, 2025Aug 6, 2025

• python-template

  Public template
  Python template repository

  Makefile

  •0•0•0•0•Updated Jul 14, 2025Jul 14, 2025

• af3-input

  Public
  AlphaFold 3 Input Generation with MMseqs2 and plmMSA

  Python

  •1•2•0•0•Updated Jun 12, 2025Jun 12, 2025

• DeepFold

  Public
  Framework for project DeepFold.

  protein-protein-interactionprotein-foldingprotein-structure-prediction

  protein-protein-interactionprotein-foldingprotein-structure-prediction

  Python

  •

  Apache License 2.0

  •0•3•0•0•Updated Jun 9, 2025Jun 9, 2025

• deepfold_v1

  Public
  Protein 3D Structure Prediction with DeepFold

  C

  •

  Apache License 2.0

  •3•0•0•0•Updated Jan 2, 2025Jan 2, 2025

• iitp-showcase

  Public
  Showcase

  Python

  •0•0•0•0•Updated Dec 12, 2024Dec 12, 2024

• trident

  Public
  A performance library for machine learning applications.

  Python

  •

  Apache License 2.0

  •13•0•0•0•Updated Oct 12, 2023Oct 12, 2023

• .github

  Public
  Special repository for the organization's profile.

  0•0•0•0•Updated Aug 25, 2023Aug 25, 2023

• DeepFold_DB_docs

  Public
  HTML

  •0•0•0•0•Updated Aug 22, 2023Aug 22, 2023