Repositories list

• markeR

  Public
  🧬 Toolkit for Evaluating Gene Sets as Phenotype Markers in R

  gene-setsgene-expressionr-package+ 4phenotypestranscriptomicsrna-seq-datagene-signatures

  R

  •0•4•5•1•Updated Sep 12, 2025Sep 12, 2025

• CHARM

  Public
  Comprehensive Hub for Alternative Regulatory Mapping

  gene-expressionrna-binding-proteinsrna-binding+ 3splicingsplicing-regulationrna-maps

  R

  •

  MIT License

  •0•0•0•0•Updated Sep 1, 2025Sep 1, 2025

• StressGranules

  Public
  This repository contains the analyses pertaining to {insert doi}

  Python

  •

  MIT License

  •0•0•0•0•Updated Aug 5, 2025Aug 5, 2025

• voyAGEr

  Public
  ⏳ Online graphical interface to explore age-related gene expression alterations in 49 GTEx human tissues

  bioinformaticsweb-appcomputational-biology+ 5gene-expressionhumangtextranscriptomeageing

  HTML

  •1•2•1•0•Updated Jul 14, 2025Jul 14, 2025

• Template_PhDTheses_FMUL

  Public
  Template for PhD Theses from FMUL

  BibTeX Style

  •0•1•0•0•Updated Jul 1, 2025Jul 1, 2025

• compbio-app-server

  Public
  CompBio app server to host Python and R Shiny web apps

  pythonweb-serverweb+ 9servershinyrstudiocelerycompbioshinyproxydocker+ 2

  HTML

  •

  MIT License

  •4•7•1•0•Updated May 30, 2025May 30, 2025

• scStudio

  Public
  A User-Friendly Web Application for Intuitive and Comprehensive scRNA-seq Data Analysis

  R

  •2•6•0•0•Updated Apr 27, 2025Apr 27, 2025

• MuscleImmuneAging

  Public
  Supplementary files related to the methods used to analyze scRNA-seq data from the Sousa et al. paper, "The Immune Landscape of Murine Skeletal Muscle Regeneration and Aging.".

  HTML

  •1•1•0•0•Updated Jan 3, 2025Jan 3, 2025

• MCT

  Public
  Scripts used for data analysis in the manuscript: "Sustained macrophage reprogramming is required for CD8 T cell-dependent long-term tumor resolution"

  HTML

  •1•0•0•0•Updated Jan 2, 2025Jan 2, 2025

• betAS

  Public
  Intuitive analysis and visualisation of differential alternative splicing based on beta distributions.

  web-appvisualisationcomputational-biology+ 3differential-alternative-splicingbeta-distributionsr

  R

  •

  Other

  •4•11•0•0•Updated Apr 23, 2024Apr 23, 2024