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    30 repositories

    • spotlight

      Public
      teensy code to control spotlights
      C++
      •0•0•1•0•Updated Oct 29, 2025Oct 29, 2025

    • mouse_shelter

      Public
      teensy code for controlling shelter in 2w330 mouse rig
      experimentautomationneuroscience
      experimentautomationneuroscience
      C++
      •0•0•0•0•Updated Mar 6, 2025Mar 6, 2025

    • NPMK

      Public
      Neural Processing Matlab Kit is a set of functions for loading and manipulating data from Blackrock Microsystems' data files (.CCF, .NEV, .NSx).
      MATLAB
      •65•0•0•0•Updated Aug 13, 2022Aug 13, 2022

    • Kilosort2

      Public
      Fast spike sorting with drift correction for up to a thousand channels
      MATLAB
      •
      GNU General Public License v2.0
      •282•0•0•0•Updated Nov 6, 2019Nov 6, 2019

    • MOVER

      Public
      Processing
      •
      MIT License
      •0•0•0•0•Updated Oct 9, 2019Oct 9, 2019

    • nanshe_workflow_deploy_janelia

      Public
      Helps install and run the workflow on the Janelia Cluster.
      Shell
      •
      BSD 3-Clause "New" or "Revised" License
      •3•0•0•0•Updated Mar 10, 2019Mar 10, 2019

    • docker_nanshe_workflow

      Public
      A docker container holding the nanshe workflow and the dependencies needed to run it.
      Python
      •
      Apache License 2.0
      •3•0•0•0•Updated Mar 10, 2019Mar 10, 2019

    • nanshe_workflow

      Public
      Provides a Jupyter workflow for running nanshe.
      Python
      •
      Apache License 2.0
      •4•3•0•0•Updated Mar 10, 2019Mar 10, 2019

    • docker_nanshe_notebook

      Public
      A docker container with nanshe and the Jupyter Notebook installed
      Dockerfile
      •2•0•0•0•Updated Mar 10, 2019Mar 10, 2019

    • docker_centos_conda

      Public
      For building a docker image on CentOS with miniconda installed.
      Shell
      •
      Apache License 2.0
      •2•0•0•0•Updated Feb 28, 2019Feb 28, 2019

    • nanshe

      Public
      An image processing toolkit
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •6•0•0•0•Updated Dec 23, 2018Dec 23, 2018

    • docker_nanshe

      Public
      A repo to build a docker image with the latest working release of nanshe and its dependencies.
      Dockerfile
      •3•0•0•0•Updated Dec 23, 2018Dec 23, 2018

    • docker_centos_mirror

      Public
      A mirror for the CentOS Docker image
      Dockerfile
      •
      Apache License 2.0
      •2•0•0•0•Updated Dec 23, 2018Dec 23, 2018

    • rank_filter

      Public
      A simple python module containing an in-place linear rank filter optimized in C++.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •8•0•0•0•Updated Nov 2, 2018Nov 2, 2018

    • docker_centos_drmaa_conda

      Public
      For building a docker image on CentOS with Grid Engine, DRMAA, and miniconda installed.
      Shell
      •
      Apache License 2.0
      •4•0•0•0•Updated Apr 18, 2018Apr 18, 2018

    • librealsense

      Public
      Intel® RealSense™ SDK
      C++
      •
      Apache License 2.0
      •5k•0•0•0•Updated Apr 9, 2018Apr 9, 2018

    • docker_nanshe_workflow_mirror

      Public
      A simple Dockerfile to mirror the nanshe_workflow container to other Docker registries.
      Apache License 2.0
      •2•0•0•0•Updated Jan 30, 2018Jan 30, 2018

    • splauncher

      Public
      Provides simple strategies for launching jobs.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•0•0•Updated Jul 10, 2017Jul 10, 2017

    • stellate-model

      Public
      Example code for the model in http://dx.doi.org/10.1371/journal.pcbi.1000290
      MATLAB
      •1•0•0•0•Updated Mar 27, 2017Mar 27, 2017

    • nanshe_workflow_deploy_aws

      Public
      Helps install and run the workflow on AWS.
      Creative Commons Zero v1.0 Universal
      •2•0•0•0•Updated Nov 22, 2016Nov 22, 2016

    • datapak

      Public
      2015exp
      MATLAB
      •1•0•0•0•Updated Nov 18, 2016Nov 18, 2016

    • runipy

      Public
      Run IPython notebooks as command-line scripts, generate HTML reports
      Python
      •
      BSD 2-Clause "Simplified" License
      •89•0•0•0•Updated Sep 20, 2016Sep 20, 2016

    • lab_config

      Public
      A prototype for filling out a lab config.
      1•0•0•2•Updated Jul 28, 2016Jul 28, 2016

    • namd

      Public
      RGB Image processor, denoiser, tracking, for neurons and mrna
      MATLAB
      •0•0•0•0•Updated Jul 18, 2016Jul 18, 2016

    • ns_converter

      Public
      Converts ns files to HDF5.
      1•0•0•0•Updated Jun 10, 2016Jun 10, 2016

    • nanshe-build

      Public
      Conda-based build system for nanshe and its dependencies.
      Shell
      •3•0•0•0•Updated Mar 14, 2016Mar 14, 2016

    • docker_nanshe_mirror

      Public
      Simply pulls in this image ( https://github.com/nanshe-org/docker_nanshe ).
      2•0•0•0•Updated Nov 23, 2015Nov 23, 2015

    • git_ready

      Public
      iPython Notebook with slides for demonstrating to a beginner how to use git with examples.
      1•0•0•0•Updated Sep 28, 2015Sep 28, 2015

    • mouse_record

      Public
      An Event Triggered Recorder
      Python
      •
      Other
      •3•0•3•1•Updated Sep 15, 2015Sep 15, 2015

    • Corduroy

      Public
      Data acquisition and analysis code for IgorPro
      IGOR Pro
      •1•1•0•0•Updated May 27, 2015May 27, 2015
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