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    222 repositories

    • nextflow_modules

      Public
      A collection of shared Ensembl modules used in NextFlow pipelines
      Nextflow
      •3•3•1•4•Updated Mar 16, 2026Mar 16, 2026

    • ensembl-client

      Public
      Ensembl beta client
      TypeScript
      •
      Apache License 2.0
      •4•16•0•3•Updated Mar 16, 2026Mar 16, 2026

    • ensembl-thoas

      Public
      Son of Ariadne, a GraphQL server and supporting software
      Python
      •
      Apache License 2.0
      •1•3•0•8•Updated Mar 16, 2026Mar 16, 2026

    • homebrew-moonshine

      Public
      A collection of formulas where the source/archive is not readily available from a public URL
      Ruby
      •1•2•0•0•Updated Mar 16, 2026Mar 16, 2026

    • homebrew-ensembl

      Public
      Core formula for Ensembl
      Ruby
      •
      Apache License 2.0
      •13•8•0•0•Updated Mar 16, 2026Mar 16, 2026

    • homebrew-external

      Public
      Formulas hosted from the homebrew project from retired or third party repos with minor edits
      Ruby
      •
      Other
      •4•4•0•0•Updated Mar 16, 2026Mar 16, 2026

    • homebrew-cask

      Public
      Meta formulas for homebrew/linuxbrew
      Ruby
      •9•3•0•1•Updated Mar 16, 2026Mar 16, 2026

    • ensembl-variation-pipelines

      Public
      Python
      •
      Apache License 2.0
      •4•0•0•5•Updated Mar 16, 2026Mar 16, 2026

    • ensembl-metadata-api

      Public
      ensembl_genome_metadata schema SQLAlchemy ORM layer
      Python
      •
      Apache License 2.0
      •2•2•0•3•Updated Mar 16, 2026Mar 16, 2026

    • ensembl-elements

      Public
      Ensembl shared elements
      TypeScript
      •
      Apache License 2.0
      •0•0•0•0•Updated Mar 16, 2026Mar 16, 2026

    • ensembl-genes

      Public
      Python Ensembl Gene Annotation code source repository
      Python
      •
      Apache License 2.0
      •4•4•0•7•Updated Mar 16, 2026Mar 16, 2026

    • ensembl-datacheck-py

      Public
      Python
      •
      Apache License 2.0
      •4•2•0•2•Updated Mar 16, 2026Mar 16, 2026

    • ensembl-production

      Public
      Ensembl Production code
      Perl
      •
      Apache License 2.0
      •44•12•0•5•Updated Mar 16, 2026Mar 16, 2026

    • ensembl-test

      Public
      Test libraries and harnesses used for running the Ensembl test suite
      Perl
      •
      Apache License 2.0
      •7•6•0•0•Updated Mar 15, 2026Mar 15, 2026

    • ensembl-compara

      Public
      The Ensembl Compara Perl API and SQL schema
      mysqlapibioinformatics
      mysqlapibioinformaticsdatabaseperlensemblcomparative-genomics
      Perl
      •
      Apache License 2.0
      •69•55•0•3•Updated Mar 15, 2026Mar 15, 2026

    • VEP_plugins

      Public
      Plugins for the Ensembl Variant Effect Predictor (VEP)
      Perl
      •
      Apache License 2.0
      •124•166•5•3•Updated Mar 13, 2026Mar 13, 2026

    • ensembl-webcode

      Public
      The code to run an Ensembl website
      Perl
      •
      Apache License 2.0
      •52•22•0•6•Updated Mar 13, 2026Mar 13, 2026

    • ensembl-hypsipyle

      Public
      Ensembl Variation GraphQL server
      Python
      •
      Apache License 2.0
      •3•0•5•2•Updated Mar 13, 2026Mar 13, 2026

    • ensembl-analysis

      Public
      Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines
      Perl
      •
      Apache License 2.0
      •35•18•0•1•Updated Mar 12, 2026Mar 12, 2026

    • ensembl-dauphin-style-compiler

      Public
      "dauphin" style-compiler for genome browser
      Rust
      •0•0•10•2•Updated Mar 12, 2026Mar 12, 2026

    • ensembl-variation

      Public
      The Ensembl Variation Perl API and SQL schema
      Perl
      •
      Apache License 2.0
      •59•30•0•14•Updated Mar 12, 2026Mar 12, 2026

    • ensembl-web-metadata-api

      Public
      Metadata API for beta.ensembl.org
      Python
      •
      Apache License 2.0
      •0•0•0•4•Updated Mar 12, 2026Mar 12, 2026

    • ensembl-web-track-api

      Public
      A Django app for serving the available annotation tracks for Ensembl client.
      Python
      •
      Apache License 2.0
      •1•1•0•0•Updated Mar 12, 2026Mar 12, 2026

    • ensembl-genes-metadata

      Public
      1•1•2•2•Updated Mar 12, 2026Mar 12, 2026

    • public-plugins

      Public
      Plugins for an Ensembl website
      JavaScript
      •
      Apache License 2.0
      •48•9•0•7•Updated Mar 11, 2026Mar 11, 2026

    • ensembl-io

      Public
      File parsing and writing code for Ensembl
      Perl
      •
      Apache License 2.0
      •19•10•0•2•Updated Mar 11, 2026Mar 11, 2026

    • ensembl-genes-nf

      Public
      Ensembl Genebuild NextFlow pipelines
      Nextflow
      •
      Apache License 2.0
      •5•2•0•2•Updated Mar 11, 2026Mar 11, 2026

    • ensembl-genomio

      Public
      Pipelines to turn basic genomic data into Ensembl cores and back
      Python
      •
      Apache License 2.0
      •11•9•0•7•Updated Mar 11, 2026Mar 11, 2026

    • ensembl

      Public
      The Ensembl Core Perl API and SQL schema
      Perl
      •
      Apache License 2.0
      •78•83•2•1•Updated Mar 10, 2026Mar 10, 2026

    • ensembl-datacheck

      Public
      Code for checking Ensembl databases during release production
      Perl
      •
      Apache License 2.0
      •28•5•0•2•Updated Mar 10, 2026Mar 10, 2026