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    20 repositories

    • docker-ubuntu-hbase

      Public
      Dockerfile for running HBase on Ubuntu
      Apache License 2.0
      •5•7•6•1•Updated Feb 18, 2020Feb 18, 2020

    • bdg-formats

      Public
      Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.
      Shell
      •
      Apache License 2.0
      •35•0•0•0•Updated Nov 6, 2016Nov 6, 2016

    • optithera-scripts

      Public
      Various scripts developed for the Opti-Thera project at the CRCHUM
      Java
      •
      Apache License 2.0
      •2•0•0•0•Updated May 6, 2016May 6, 2016

    • docker-ubuntu-adam

      Public
      (Genomics) Dockerfile for running Adam - http://bdgenomics.org
      Apache License 2.0
      •3•4•3•0•Updated Feb 12, 2016Feb 12, 2016

    • 1kg-metadata

      Public
      1000 Genome Project Metadata
      JavaScript
      •
      Apache License 2.0
      •0•0•7•0•Updated Jan 16, 2016Jan 16, 2016

    • adam-ibs

      Public
      Ports the IBS/MDS/IBD functionality of Plink to Spark / ADAM
      Scala
      •
      Apache License 2.0
      •6•3•28•0•Updated Nov 9, 2015Nov 9, 2015

    • variantminer

      Public
      A web UI over genomic data
      Scala
      •
      Apache License 2.0
      •1•0•14•0•Updated Oct 28, 2015Oct 28, 2015

    • sample-hbase-app

      Public
      Sample Java application that communicates with HBase via the HBase API.
      Java
      •
      Apache License 2.0
      •3•0•0•0•Updated Oct 6, 2015Oct 6, 2015

    • genomic-projects

      Public
      Repository for all Genomic Projects
      Ruby
      •0•0•0•0•Updated Sep 18, 2015Sep 18, 2015

    • adamcloud

      Public
      Portable cloud infrastructure for a genomic transformation pipeline using Adam
      Python
      •0•1•10•0•Updated Jul 23, 2015Jul 23, 2015

    • example-avro-parquet-spark

      Public
      Ce projet est un exemple démontrant premièrement comment convertir un fichier Avro en classes Java. Ensuite ce projet montre comment persister des données à l'…
      Scala
      •0•0•0•0•Updated Jun 24, 2015Jun 24, 2015

    • plink-ng

      Public
      A comprehensive update to the PLINK association analysis toolset. Beta testing of the first new version (1.90), focused on speed and memory efficiency improvem…
      C
      •
      GNU General Public License v3.0
      •146•0•0•0•Updated May 13, 2015May 13, 2015

    • docker-ubuntu-avocado

      Public
      (Genomics) Dockerfile for running Avocado - http://bdgenomics.org
      Apache License 2.0
      •1•0•2•0•Updated Apr 14, 2015Apr 14, 2015

    • plink

      Public
      (Genomics) Dockerfile for running plink v1 - http://pngu.mgh.harvard.edu/~purcell/plink/
      C++
      •
      GNU General Public License v2.0
      •4•5•1•0•Updated Apr 14, 2015Apr 14, 2015

    • docker-ubuntu-java

      Public
      Java Dockerfile for trusted automated Docker builds.
      MIT License
      •515•0•0•0•Updated Apr 11, 2015Apr 11, 2015

    • mononews-backend

      Public
      Backend of the Mononews application: www.mononews.ca
      Apache License 2.0
      •0•0•0•0•Updated Mar 11, 2015Mar 11, 2015

    • docker-ubuntu-scala

      Public
      Dockerfile for running Scala on Ubuntu
      Apache License 2.0
      •0•0•0•0•Updated Mar 1, 2015Mar 1, 2015

    • docker-ubuntu-snap

      Public
      (Genomics) Dockerfile for running Snap (Scalable Nucleotide Alignment Program) - http://snap.cs.berkeley.edu/
      Apache License 2.0
      •0•0•0•0•Updated Mar 1, 2015Mar 1, 2015

    • avocado

      Public
      A Variant Caller, Distributed. Apache 2 licensed.
      Scala
      •
      Other
      •41•0•0•0•Updated Feb 20, 2015Feb 20, 2015

    • adam

      Public
      A genomics processing engine and specialized file format built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.
      Scala
      •
      Other
      •315•0•0•0•Updated Feb 18, 2015Feb 18, 2015