Innovation Center for Biomedical Informatics (ICBI) at Georgetown University

All

24 repositories

AIMAHEAD_GU
Public
AIM AHEAD at Georgetown University
Jupyter Notebook
•1•1•0•0•Updated Mar 4, 2026Mar 4, 2026
.github
Public
Welcome to Georgetown University Innovation Center for Biomedical Informatics !
data-science machine-learning bioinformatics
data-science machine-learning bioinformatics genomics systems-biology biomedical-informatics healthinformatics
Jupyter Notebook
•0•0•0•0•Updated Mar 3, 2026Mar 3, 2026
appsmith-nmhf-portal
Public
Documentation, assets, and configuration for the NMHF Data Ecosystem Appsmith application
Apache License 2.0
•0•0•0•0•Updated Oct 7, 2025Oct 7, 2025
AIMAHEAD_GU_publicCourseData
Public
Public repository containing public materials for associated online courses
Jupyter Notebook
•0•0•0•0•Updated Sep 18, 2025Sep 18, 2025
LifeStressorDigitalTwin
Public
Jupyter Notebook
•0•0•0•0•Updated Dec 19, 2024Dec 19, 2024
viGEN
Public
viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data
bioinformatics r virus
bioinformatics r virus genomics metagenomics rnaseq bacteria viroinformatics
Shell
•
MIT License
•15•28•0•0•Updated Oct 8, 2024Oct 8, 2024
Data.Bridge.Notebooks
Public
AIM AHEAD Data Bridge Notebooks
python r
python r
Jupyter Notebook
•0•0•0•0•Updated May 21, 2024May 21, 2024
BISR_Resource
Public
Tutorials and training material from Georgetown University Biomedical Informatics Shared Resources (BISR)
informatics biomedical
informatics biomedical
Jupyter Notebook
•0•2•0•0•Updated Nov 9, 2023Nov 9, 2023
Open-Science-Projects
Public
Open Science Projects at Georgetown-ICBI
data-science bioinformatics systems-biology
data-science bioinformatics systems-biology biomedical-informatics precision-medicine health-informatics
GNU General Public License v3.0
•0•4•0•0•Updated Apr 21, 2023Apr 21, 2023
rembrandt-mri
Public
Code used for the REMBRANDT MRI paper
Python
•1•1•0•0•Updated Jun 1, 2022Jun 1, 2022
CINdex
Public
CINdex Bioconductor package. Read more here: https://www.bioconductor.org/packages/release/bioc/html/CINdex.html
r copynumber bioconductor-package
r copynumber bioconductor-package chromsome-instability
R
•0•1•0•0•Updated Feb 27, 2021Feb 27, 2021
MACE2K
Public
MACE2K project members develop new computational methods and software to retrieve genes, disease, variant, drug related information from multiple sources of big…
JavaScript
•0•0•0•0•Updated Jun 2, 2020Jun 2, 2020
Supporting-Files-For-Grants
Public
Supporting Files For Grants
0•0•0•0•Updated May 6, 2020May 6, 2020
sevenbridgesworkflows
Public
Genomics pipelines in JSON format
0•1•0•0•Updated Mar 8, 2019Mar 8, 2019
gdoc
Public
G-DOC Web Application
bioinformatics systems-biology cancer-research
bioinformatics systems-biology cancer-research precision-medicine translational-research
Groovy
•1•4•0•0•Updated Oct 4, 2018Oct 4, 2018
OPRMA
Public
Online Platform for RNA Modification Analysis (OPRMA) for CLIP-seq data analysis
0•0•0•0•Updated Sep 25, 2017Sep 25, 2017
neoantigeR
Public
a R package to identify neoantigens from NGS data
R
•2•18•1•0•Updated Jun 29, 2017Jun 29, 2017
grails-gcore
Public
G-CORE Project
JavaScript
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Other
•0•0•0•0•Updated Jun 9, 2017Jun 9, 2017
medturk
Public
medTurk (inspired by Amazon's Mechanical Turk) supports clinical research by using the ingenuity of humans to convert unstructured clinical notes into structure…
JavaScript
•
GNU General Public License v3.0
•0•3•0•0•Updated Jun 18, 2015Jun 18, 2015
ICBI_multi_omics_processing_public
Public
Describes our multi omics analysis workflow
CSS
•0•0•0•0•Updated Mar 4, 2014Mar 4, 2014
AISAIC
Public
Accurate Identification of Significant Aberrations in Cancer Genome (AISAIC)
0•0•0•0•Updated Dec 9, 2013Dec 9, 2013
SIGH
Public
Significant Intratumor Genomic Heterogeneity
0•1•0•0•Updated Dec 5, 2013Dec 5, 2013
MetPlus-DB
Public
0•1•0•0•Updated Sep 10, 2013Sep 10, 2013
analysis-server
Public
Analysis server
Java
•0•0•0•0•Updated Oct 23, 2012Oct 23, 2012