Repositories list

• pycellin

  Public
  Graph-based framework to manipulate and analyze cell lineages from cell tracking data

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•24•7•2•Updated Apr 3, 2026Apr 3, 2026

• Epicure

  Public
  Napari plugin to ease manual correction of epithelial movie segmentation

  trackingtissueinteractive+ 4

  trackingtissueinteractivesegmentationcorrectionepitheliatissue-analysis

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •2•7•1•0•Updated Mar 27, 2026Mar 27, 2026

• dextrusion-appose

  Public
  Dextrusion as a Fiji plugin thanks to Appose

  Java

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Mar 27, 2026Mar 27, 2026

• cellpose-appose

  Public
  Fiji plugin to use Cellpose with Appose

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •0•6•2•0•Updated Mar 26, 2026Mar 26, 2026

• DeXtrusion

  Public
  Automatic detection of epithelial cell events, in particular cell extrusion

  PureBasic

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Mar 25, 2026Mar 25, 2026

• napari-epyseg

  Public
  Plugin to run epyseg within napari

  segmentationepithelianapari-plugin

  segmentationepithelianapari-plugin

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•2•0•0•Updated Mar 24, 2026Mar 24, 2026

• yolo-appose

  Public
  Fiji plugin for Yolo image detection via Appose

  Java

  •0•1•0•0•Updated Mar 11, 2026Mar 11, 2026

• Icy-Cellpose

  Public
  Java

  •

  GNU Lesser General Public License v3.0

  •0•1•0•0•Updated Mar 6, 2026Mar 6, 2026

• .github

  Public
  0•0•0•0•Updated Feb 18, 2026Feb 18, 2026

• DeProj

  Public
  MATLAB

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Feb 14, 2026Feb 14, 2026

• BacteriaMethodsCode

  Public
  Notebooks and scripts for Bacteria Methods paper

  Jupyter Notebook

  •0•0•0•0•Updated Dec 10, 2025Dec 10, 2025

• localZBackProjector

  Public
  Retrieves the height map from 2D denoised projected epithelia image

  tissueprojectionheightmap+ 2

  tissueprojectionheightmapbioimage-analysisepithelia

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Dec 4, 2025Dec 4, 2025

• Pasteur-BioImage-Analysis-Course-2025

  Public
  Teaching materials and outline for the Pasteur Bioimage Analysis vour

  segmentationteaching-materialsbioimage-analysis+ 1

  segmentationteaching-materialsbioimage-analysisspatial-transcriptomics

  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •0•16•0•0•Updated Jun 2, 2025Jun 2, 2025

• LocalZProjector

  Public
  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •0•3•0•0•Updated Sep 25, 2023Sep 25, 2023