Repositories list

• actionet-r

  Public
  R

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Feb 16, 2026Feb 16, 2026

• actionet-python

  Public
  Jupyter Notebook

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Feb 16, 2026Feb 16, 2026

• libactionet

  Public
  C++

  •

  GNU Affero General Public License v3.0

  •0•0•0•0•Updated Feb 15, 2026Feb 15, 2026

• auto-meeting-minutes

  Public
  Python

  •2•0•0•5•Updated Jan 5, 2026Jan 5, 2026

• mantis_course

  Public
  0•0•0•0•Updated Jan 3, 2026Jan 3, 2026

• MantisExtensionsBackend

  Public
  Python

  •1•1•0•0•Updated Dec 11, 2025Dec 11, 2025

• MantisExtensions

  Public
  TypeScript

  •4•1•2•6•Updated Dec 11, 2025Dec 11, 2025

• haploreg-next-v5

  Public
  TypeScript

  •0•0•0•0•Updated Dec 4, 2025Dec 4, 2025

• Mantis_SDK

  Public
  Python

  •

  Other

  •1•3•0•2•Updated Nov 23, 2025Nov 23, 2025

• banksy-hd

  Public
  BANKSY for high dimensional spatial transcriptomics (like Visium HD)

  Python

  •

  GNU General Public License v3.0

  •0•4•0•0•Updated Nov 19, 2025Nov 19, 2025

• evolutionDeepLearning

  Public
  Analysis scripts associated with "Deep learning predicts cis-regulatory turnover in human evolution". Mangan et al, BioRxiv 2025.

  R

  •

  BSD 3-Clause "New" or "Revised" License

  •0•1•0•0•Updated Oct 31, 2025Oct 31, 2025

• benj

  Public
  benj benj benj

  Python

  •

  GNU General Public License v3.0

  •1•5•0•0•Updated Oct 2, 2025Oct 2, 2025

• deg-pipeline

  Public
  R

  •0•0•0•0•Updated Oct 1, 2025Oct 1, 2025

• Mantis-Discord-Bot

  Public
  Python

  •0•0•2•0•Updated Sep 26, 2025Sep 26, 2025

• CellProjectedPhenotypes

  Public
  Projecting donor-level phenotypes onto single cells through KNN-neighborhood abundance association analysis.

  R

  •

  BSD 3-Clause "New" or "Revised" License

  •0•1•0•0•Updated Jun 19, 2025Jun 19, 2025

• mantis_transcribe_minutes

  Public
  Python

  •1•0•0•1•Updated Jun 16, 2025Jun 16, 2025

• human_metab

  Public
  R

  •0•0•0•0•Updated May 14, 2025May 14, 2025

• scdemon

  Public
  single-cell decorrelated module networks

  Python

  •

  GNU General Public License v3.0

  •2•30•1•0•Updated Aug 24, 2024Aug 24, 2024

• scCancer

  Public
  metastatic melanoma project

  Jupyter Notebook

  •1•4•0•0•Updated Jun 20, 2024Jun 20, 2024

• miBrain

  Public
  R

  •

  GNU General Public License v3.0

  •0•3•0•0•Updated Jan 25, 2024Jan 25, 2024

• epiclust

  Public
  Python

  •

  GNU General Public License v3.0

  •1•4•1•0•Updated Nov 11, 2023Nov 11, 2023

• AD_regulome_analysis

  Public
  AD regulome analysis

  R

  •3•14•1•0•Updated Apr 4, 2023Apr 4, 2023

• scmetab

  Public
  single-cell and bulk RNA-seq pipeline used in the project

  R

  •2•0•0•0•Updated Jan 14, 2023Jan 14, 2023

• neurogen-student

  Public
  Jupyter Notebook

  •1•1•0•0•Updated Nov 20, 2022Nov 20, 2022

• EpiMap_GRCh38_linking

  Public
  Remapping of EpiMap linking onto GRCh38

  Python

  •0•0•0•0•Updated Oct 5, 2022Oct 5, 2022

• epimap_vis

  Public
  Code for EpiMap data browser

  R

  •4•0•0•0•Updated Sep 15, 2020Sep 15, 2020

• EPIMAP_ANALYSIS

  Public
  Epimap processing and analysis code repository

  Jupyter Notebook

  •14•0•0•0•Updated Oct 31, 2019Oct 31, 2019