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@LCSB-BioCore Luxembourg Centre for Systems Biomedicine

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    27 repositories

    • SBML.jl

      Public
      Julia interface to the Systems Biology Markup Language (SBML) library
      modelingsystems-biologycobralibsbmlsbml
      Julia
      •
      Apache License 2.0
      •12•30•4•0•Updated Dec 1, 2025Dec 1, 2025

    • clusterpainter

      Public
      simple metaclustering/annotation tool
      visualizationclustering
      Haskell
      •
      Apache License 2.0
      •0•0•0•0•Updated Nov 4, 2025Nov 4, 2025

    • remotesom

      Public
      fast federated training of self-organizing maps with TLS-encrypted&authenticated traffic
      Haskell
      •
      Apache License 2.0
      •1•1•0•0•Updated Nov 4, 2025Nov 4, 2025

    • GigaSOM.jl

      Public
      Huge-scale, high-performance flow cytometry clustering in Julia
      clusteringsomartificial-intelligenceneural-networksimmunologyself-organizing-maplarge-scalecytofflow-cytometrymass-cytometry
      Julia
      •
      Apache License 2.0
      •9•36•0•1•Updated Nov 3, 2025Nov 3, 2025

    • frog-specification

      Public
      TeX
      •
      Apache License 2.0
      •2•2•1•0•Updated Oct 22, 2025Oct 22, 2025

    • leopard

      Public
      graphs for the LEOPARD study. They can be embedded in Adept dashboard
      0•0•0•0•Updated Sep 18, 2025Sep 18, 2025

    • cwl-example-workflows

      Public
      Example workflows written in CWL
      Common Workflow Language
      •
      Apache License 2.0
      •6•0•0•0•Updated May 5, 2025May 5, 2025

    • COBREXA.jl

      Public
      Constraint-Based Reconstruction and EXascale Analysis
      hpchigh-performancejuliacobraexascaleconstraint-based-modelingexascale-analysis
      Julia
      •
      Apache License 2.0
      •8•45•7•0•Updated Oct 23, 2024Oct 23, 2024

    • CuFluxSampler.jl

      Public
      GPU-accelerated algorithms for flux sampling in CUDA.jl
      gpujuliacudasamplingmetabolismcobrametabolic-network
      Julia
      •
      Apache License 2.0
      •0•1•1•1•Updated Jun 19, 2024Jun 19, 2024

    • FBCModelTests.jl

      Public
      Tests for constraint-based metabolic models
      Julia
      •
      Apache License 2.0
      •5•6•7•2•Updated Feb 5, 2024Feb 5, 2024

    • PikaParser.jl

      Public
      Pure Julia implementation of pika parser.
      juliaparser-library
      Julia
      •
      Apache License 2.0
      •2•56•1•0•Updated Oct 9, 2023Oct 9, 2023

    • foreman

      Public
      an application that automates the lifecycle of servers
      Ruby
      •
      GNU General Public License v3.0
      •1k•0•0•0•Updated Aug 17, 2023Aug 17, 2023

    • GigaScatter.jl

      Public
      Fast rasterization of huge amounts of tiny transparent points (in Julia)
      Julia
      •
      Apache License 2.0
      •0•9•4•0•Updated Mar 23, 2023Mar 23, 2023

    • sensitive-data-simulator

      Public
      (This repository contents is only temporary, the app is now under construction)
      HTML
      •0•0•0•0•Updated Mar 15, 2023Mar 15, 2023

    • icons-mirror

      Public
      mirror of icons and emojis for publishing online slides
      CSS
      •
      Apache License 2.0
      •0•0•0•0•Updated Mar 2, 2023Mar 2, 2023

    • basic-git-practice

      Public
      Basic git course - Practice repository
      gitjekyllbasicwebsitepracticecourse
      48•4•0•0•Updated Feb 21, 2023Feb 21, 2023

    • VkComputeUtils.jl

      Public
      Convenience utilities for running compute shaders with Vulkan in Julia
      hpcgpujuliavulkangpu-computing
      Julia
      •
      Apache License 2.0
      •0•1•0•0•Updated Sep 30, 2022Sep 30, 2022

    • DistributedData.jl

      Public
      Simple distributed data manipulation and processing routines in Julia
      datajuliadistributed
      Julia
      •
      Apache License 2.0
      •0•17•0•0•Updated Mar 22, 2022Mar 22, 2022

    • gPAS

      Public
      A Generic Pseudonym Administration Service
      Java
      •
      GNU Affero General Public License v3.0
      •5•0•0•0•Updated May 12, 2021May 12, 2021

    • Fractalis

      Public
      [Back-end] A scalable open-source service for platform-independent interactive visual analysis of biomedical data
      Python
      •
      Apache License 2.0
      •3•8•0•0•Updated Apr 20, 2021Apr 20, 2021

    • roadmap

      Public
      DCC/UC3 collaboration for a data management planning tool
      Ruby
      •
      MIT License
      •118•0•0•0•Updated Mar 26, 2021Mar 26, 2021

    • advanced-git-practice

      Public
      Practice repository advanced git training.
      9•1•0•0•Updated Mar 18, 2021Mar 18, 2021

    • tagger

      Public
      C++
      •
      BSD 2-Clause "Simplified" License
      •9•0•0•0•Updated Sep 17, 2020Sep 17, 2020

    • mamba

      Public
      Python
      •
      Other
      •1•0•0•0•Updated Sep 16, 2020Sep 16, 2020

    • jekyll-paginate-v2

      Public
      Pagination Generator for Jekyll 3 (enhanced replacement for the old built-in jekyll-paginate gem) ⛺
      Ruby
      •
      MIT License
      •285•0•0•0•Updated Feb 8, 2020Feb 8, 2020

    • Fractal.js

      Public
      [Front-end] A scalable open-source service for platform-independent interactive visual analysis of biomedical data
      Vue
      •
      Apache License 2.0
      •1•2•0•0•Updated Apr 12, 2019Apr 12, 2019

    • Fractalis-Issues

      Public
      Public issue tracker for the entire Fractalis project
      0•0•16•0•Updated Jul 18, 2018Jul 18, 2018