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    • iSIM

      Public
      iSIM control and analysis software
      Python
      1030Updated Feb 26, 2026Feb 26, 2026
    • Vector electromagnetic field calculations in the focus of high NA microscope objectives.
      Python
      GNU General Public License v3.0
      0200Updated Feb 2, 2026Feb 2, 2026
    • qExM_code

      Public
      Data and code for Quantitative Expansion Microscopy for In Situ Estimation of Endogenous Target Abundance
      Python
      0000Updated Jan 24, 2026Jan 24, 2026
    • Resources for the basic training in microscopy course in the LEB
      C++
      GNU General Public License v3.0
      0000Updated Jan 15, 2026Jan 15, 2026
    • Scripts and notebooks for annotation and handling of phase and fluorescent data for preparation and training of neural networks for event detection.
      Python
      GNU Affero General Public License v3.0
      0200Updated Jan 12, 2026Jan 12, 2026
    • Smart microscopy library at LEB EPFL
      Python
      GNU Affero General Public License v3.0
      0200Updated Jun 26, 2025Jun 26, 2025
    • Tutorials on how to do quantitative expansion microscopy sample preparation
      0200Updated Apr 2, 2025Apr 2, 2025
    • Python
      BSD 3-Clause "New" or "Revised" License
      0030Updated Mar 7, 2025Mar 7, 2025
    • This is a wiki page for the labs Zeiss Axio Observer 7 microscope
      Python
      0220Updated Mar 7, 2025Mar 7, 2025
    • Detection of mitochondrial divisions with neural networks
      Jupyter Notebook
      Other
      0230Updated Jan 6, 2025Jan 6, 2025
    • A simple plugin for injecting images into Micro-Manager's demo camera.
      Java
      GNU General Public License v3.0
      1200Updated Nov 21, 2024Nov 21, 2024
    • kpal

      Public
      Hardware control for imaging science
      Python
      Other
      0100Updated Oct 26, 2024Oct 26, 2024
    • Plugin for event-driven acquisition to be used with Micro-Manager
      Python
      BSD 3-Clause "New" or "Revised" License
      1500Updated Jul 5, 2024Jul 5, 2024
    • Python
      GNU General Public License v3.0
      0100Updated Mar 8, 2024Mar 8, 2024
    • ptycho

      Public
      Hardware control and image analysis code for Fourier ptychography.
      Jupyter Notebook
      MIT License
      0400Updated Jan 22, 2024Jan 22, 2024
    • 0000Updated Oct 2, 2023Oct 2, 2023
    • python-isim-control

      Public archive
      Python Control Interface for the iSIM at LEB-EPFL
      Python
      GNU General Public License v3.0
      0010Updated Aug 4, 2023Aug 4, 2023
    • imajin

      Public archive
      Tools to simulate optics and microscopy experiments.
      Python
      0000Updated Aug 3, 2023Aug 3, 2023
    • project_layout

      Public template
      Python
      0200Updated May 23, 2023May 23, 2023
    • rats

      Public
      High performance probabilistic state machine simulator
      Rust
      MIT License
      0000Updated Mar 16, 2023Mar 16, 2023
    • event-driven-acquisition plugin for napari
      Python
      BSD 3-Clause "New" or "Revised" License
      1120Updated Feb 2, 2023Feb 2, 2023
    • Event Server to receive Micro-Manager events in python via zeromq
      Java
      BSD 3-Clause "New" or "Revised" License
      0000Updated Dec 7, 2022Dec 7, 2022
    • EDA

      Public
      Tools for adaptive imaging in the LEB-EPFL
      Jupyter Notebook
      GNU General Public License v3.0
      2300Updated Aug 19, 2022Aug 19, 2022
    • WGmode

      Public
      2D simulation functions for slab and ridge waveguide mode study
      MATLAB
      3400Updated Oct 30, 2018Oct 30, 2018
    • DEMO 3D Double-Helix localization software
      GNU General Public License v3.0
      0000Updated Aug 29, 2018Aug 29, 2018
    • ALICA

      Public
      Automated Laser Illumination Control Algorithms
      Java
      GNU General Public License v3.0
      3620Updated Jul 13, 2018Jul 13, 2018
    • mm-docker

      Public
      Dockerfiles for building Micro-Manager components.
      Shell
      GNU General Public License v3.0
      0210Updated Jun 13, 2018Jun 13, 2018
    • Analyzer and controller implementations for ALICA.
      Java
      GNU General Public License v3.0
      0200Updated Jun 6, 2018Jun 6, 2018
    • SASS

      Public
      Toolkit for simulating real-time control systems for super-resolution microscopy.
      Java
      GNU General Public License v3.0
      4770Updated Jun 5, 2018Jun 5, 2018
    • An ImageJ plugin for DEFCoN, the fluorescence spot counter based on fully convolutional neural networks.
      Java
      GNU General Public License v3.0
      0220Updated Jun 5, 2018Jun 5, 2018