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@LarsonLab UCSF Peder Larson Research Group

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    Repositories list

    24 repositories

    • LarsonLab.github.io

      Public
      Research group web site, with a focus on blog-style content
      JavaScript
      •
      MIT License
      •1•0•4•0•Updated Aug 31, 2026Aug 31, 2026

    • open-data-registry

      Public
      A registry of publicly available datasets on AWS
      Python
      •
      Apache License 2.0
      •1.2k•0•0•0•Updated Aug 31, 2026Aug 31, 2026

    • UCSF-ProstateMR

      Public
      Prostate multiparametric MRI dataset with 973 exams as well as biopsy annotations, PI-RADS scores, and other clinical metadata. doi: :10.58078/C2MW2X
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Aug 21, 2026Aug 21, 2026

    • hyperpolarized-mri-toolbox

      Public
      The goal of this toolbox is to provide open-source research-level and prototyping software tools for hyperpolarized MRI experiments. It is currently based on MA…
      mrirf-pulseskinetic-modeling
      mrirf-pulseskinetic-modelingmri-acquisitionmri-signalshyperpolarized-mri-experiments
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •35•49•11•1•Updated Jul 18, 2026Jul 18, 2026

    • UCSF-RMaC

      Public template
      A dataset of 831 3D Multiphase CT exams of renal masses from UCSF. doi:10.58078/C2WC74
      Jupyter Notebook
      •
      MIT License
      •0•4•1•0•Updated Jul 14, 2026Jul 14, 2026

    • ilumr-courseware

      Public
      Courseware for the ilumr educational MRI system
      HTML
      •
      MIT License
      •6•0•2•0•Updated Jul 13, 2026Jul 13, 2026

    • UTEMRI_Brain

      Public
      Processing ultrashort echo time (UTE) MRI data in the Brain
      Jupyter Notebook
      •8•9•3•0•Updated Jul 6, 2026Jul 6, 2026

    • MRI-education-resources

      Public
      Resources for learning the principles of magnetic resonance imaging (MRI)
      mrimagnetic-resonance-imaging
      mrimagnetic-resonance-imaging
      Jupyter Notebook
      •
      MIT License
      •46•185•7•0•Updated Mar 24, 2026Mar 24, 2026

    • UCSF_Xenograft_MRI_Segmentation

      Public
      Jupyter Notebook
      •1•0•0•0•Updated Aug 12, 2025Aug 12, 2025

    • ilumr-resources

      Public
      ilumr resources
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Jun 16, 2025Jun 16, 2025

    • Radial-Field-of-Views

      Public
      Radial sampling patterns in frequency space to support anisotropic field of views (FOVs) in the dual domain
      MATLAB
      •
      BSD 3-Clause "New" or "Revised" License
      •4•15•1•0•Updated Feb 4, 2025Feb 4, 2025

    • Spectral-Spatial-RF-Pulse-Design

      Public
      This package includes Matlab functions to design spectral-spatial RF pulses (also known as spatial-spectral RF pulses) for application to magnetic resonance spe…
      MATLAB
      •
      BSD 3-Clause "New" or "Revised" License
      •20•29•2•0•Updated Jun 7, 2024Jun 7, 2024

    • dnlinv

      Public
      Reconstruction code and reproducible reconstruction scripts for DNLINV paper
      mri-reconstructiondeep-image-priorself-supervised-learning
      mri-reconstructiondeep-image-priorself-supervised-learning
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•10•1•0•Updated Feb 14, 2024Feb 14, 2024

    • LongT2-Suppression-Pulses

      Public
      Long-T2 suppression RF pulses for MRI of short and ultrashort T2 components
      MATLAB
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Jan 24, 2024Jan 24, 2024

    • SuperStimulatedEchoes

      Public
      MATLAB
      •0•0•0•0•Updated Aug 30, 2023Aug 30, 2023

    • test_book

      Public
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Oct 2, 2021Oct 2, 2021

    • enlive

      Public
      Calibrationless Parallel MRI with ENLIVE
      Jupyter Notebook
      •7•0•0•0•Updated Jun 21, 2021Jun 21, 2021

    • dworkLib

      Public
      Useful utilities
      MATLAB
      •7•0•0•0•Updated Sep 28, 2020Sep 28, 2020

    • LarsonLab-swlist

      Public
      Larson Lab Software List
      1•1•0•0•Updated Feb 5, 2019Feb 5, 2019

    • Flip-Angle-Design-Toolbox

      Public
      Tools for designing optimal flip angle schemes for hyperpolarized carbon-13 MRI
      MATLAB
      •6•0•0•0•Updated Dec 20, 2018Dec 20, 2018

    • UTE_Registration

      Public
      Registration code for UTE data
      MATLAB
      •0•0•0•0•Updated Jul 27, 2018Jul 27, 2018

    • mripy

      Public
      A python based MRI reconstruction toolbox with compressed sensing, parallel imaging and machine-learning functions
      Python
      •51•14•0•0•Updated Feb 7, 2018Feb 7, 2018

    • UTE-signal-processing

      Public
      MATLAB
      •1•0•0•0•Updated Sep 24, 2017Sep 24, 2017

    • UTE-nipype

      Public
      Primitive pipeline for imaging UTE MRI data using Nipype
      Jupyter Notebook
      •1•1•0•0•Updated Sep 4, 2017Sep 4, 2017
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