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    • sorting-curations

      Public
      holds text files with manual curation tags for spike sorting with mountainsort4
      3100Updated Apr 2, 2026Apr 2, 2026
    • spyglass

      Public
      Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF
      Jupyter Notebook
      MIT License
      541121039Updated Apr 1, 2026Apr 1, 2026
    • non_local_detector

      Public
      Jupyter Notebook
      MIT License
      1142Updated Apr 1, 2026Apr 1, 2026
    • Modeling Alison's 6 arm/3 stem task
      Jupyter Notebook
      0200Updated Mar 23, 2026Mar 23, 2026
    • echip_plating

      Public
      Batchfile
      0000Updated Mar 6, 2026Mar 6, 2026
    • trodes_to_nwb

      Public
      Converts data from SpikeGadgets to the NWB Data Format
      Jupyter Notebook
      MIT License
      43157Updated Mar 6, 2026Mar 6, 2026
    • realtime_decoder

      Public
      Python
      3540Updated Feb 3, 2026Feb 3, 2026
    • ndx-franklab-novela

      Public
      Python
      Other
      2030Updated Jan 16, 2026Jan 16, 2026
    • rec_to_nwb_yaml_creator

      Public
      Create YAML files for rec-to-NWB Conversion
      JavaScript
      MIT License
      2071Updated Jan 15, 2026Jan 15, 2026
    • ms_stim_analysis

      Public
      Collection of notebooks and scripts to create/populate spyglass tables for analysis of ms optogenetic project
      Jupyter Notebook
      0600Updated Jan 6, 2026Jan 6, 2026
    • Code supporting Lee, Denovellis et al. (2024)
      Jupyter Notebook
      MIT License
      0100Updated Dec 3, 2025Dec 3, 2025
    • Linearize 2D position to 1D using an HMM
      Python
      MIT License
      4600Updated Oct 17, 2025Oct 17, 2025
    • .github

      Public
      0000Updated Sep 18, 2025Sep 18, 2025
    • Image environment to showcase HHMI/FrankLorenLab/Spyglass
      Shell
      BSD 3-Clause "New" or "Revised" License
      5000Updated Jun 18, 2025Jun 18, 2025
    • fsgui

      Public
      Feedback and stimulation gui for real time experiment control
      Python
      MIT License
      3200Updated May 20, 2025May 20, 2025
    • Jen's analysis of PFC and HPc recordings in rats
      Python
      2000Updated Apr 21, 2025Apr 21, 2025
    • Jupyter Notebook
      0000Updated Dec 19, 2024Dec 19, 2024
    • One-click demo spyglass. Try it out here: https://spyglass.hhmi.2i2c.cloud/
      Jupyter Notebook
      2000Updated Nov 10, 2024Nov 10, 2024
    • A template for generating Dockerized implementations of Spyglass exports
      Makefile
      MIT License
      2010Updated Oct 24, 2024Oct 24, 2024
    • A python package that converts SpikeGadgets rec files in the Frank lab directory format to more useable binaries with the same directory format.
      Jupyter Notebook
      MIT License
      6312Updated Jul 8, 2024Jul 8, 2024
    • Data Migration REC -> NWB 2.0 Service
      Python
      Other
      9240Updated Jun 5, 2024Jun 5, 2024
    • Rhino's analysis of multi-site dorsal and intermediate hippocampal recordings
      Python
      MIT License
      0000Updated May 24, 2024May 24, 2024
    • Jupyter Notebook
      GNU General Public License v3.0
      7400Updated Apr 25, 2024Apr 25, 2024
    • Tools for calculating smoothed 2D position, speed, head direction
      Python
      MIT License
      2200Updated Feb 14, 2024Feb 14, 2024
    • Analysis code for Gillespie et al, eLife 2024, "Neurofeedback training can modulate task-relevant memory replay rate in rats"
      MATLAB
      MIT License
      0000Updated Jan 28, 2024Jan 28, 2024
    • Example notebook and related code to create NWB files from trodes .rec and associated files assuming franklab compatible naming system
      Jupyter Notebook
      6101Updated Jan 26, 2024Jan 26, 2024
    • Repository for Frank lab related discussions
      0000Updated Jul 18, 2023Jul 18, 2023
    • MountainSort4 spike sorting algorithm
      Python
      5000Updated Apr 10, 2023Apr 10, 2023
    • Analysis code for Joshi et al 2023 Dynamic synchronization between hippocampal representations and stepping
      MATLAB
      MIT License
      0100Updated Mar 27, 2023Mar 27, 2023
    • Jupyter Notebook
      0041Updated Oct 27, 2022Oct 27, 2022
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