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    43 repositories

    • teal-agents

      Public
      Python
      •
      Other
      •8•10•0•0•Updated Feb 9, 2026Feb 9, 2026

    • ovo-containers

      Public
      Dockerfile
      •
      MIT License
      •1•2•0•1•Updated Jan 27, 2026Jan 27, 2026

    • dynamicpv

      Public
      Evaluate present values and cost-effectiveness with dynamic pricing and uptake
      R
      •
      GNU General Public License v3.0
      •4•7•0•0•Updated Jan 24, 2026Jan 24, 2026

    • oncoPoS

      Public
      oncoPoS performs Probability of Success (PoS) calculations for a phase 3 oncology study using a Bayesian Hierarchical model. The prior in this model is based on…
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 23, 2026Jan 23, 2026

    • ovo

      Public
      OVO, an open-source ecosystem for de novo protein design
      nextflowprotein-designde-novobindcraftrfdiffusion
      Python
      •
      MIT License
      •19•104•9•1•Updated Jan 12, 2026Jan 12, 2026

    • adp

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 8, 2026Jan 8, 2026

    • General-PepMNet

      Public
      Generalization of PepMNet to allow for non-canonical amino acids and more complex peptide topologies
      Python
      •
      Other
      •1•0•0•0•Updated Jan 5, 2026Jan 5, 2026

    • py-pkglite

      Public
      A simple framework for packing source packages written in any programming language into a text file and restoring them into the original directory structure
      Python
      •
      MIT License
      •2•0•0•0•Updated Jan 2, 2026Jan 2, 2026

    • AnNoBrainer

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 2, 2026Jan 2, 2026

    • ovo-proteindj

      Public
      Python
      •
      MIT License
      •1•1•0•1•Updated Dec 19, 2025Dec 19, 2025

    • MRL-MC-Retention

      Public
      Repository for multiple condition retention time modeling (MC-Retention) and Multiple Condition adjusted Retention Time (MCaRT) dataset.
      Python
      •
      Other
      •1•0•0•0•Updated Dec 17, 2025Dec 17, 2025

    • IBMDPDesigns.jl

      Public
      Sequential planning of experimental designs under resource and target constraints.
      Julia
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      Other
      •1•0•0•0•Updated Dec 11, 2025Dec 11, 2025

    • miRQuest

      Public
      An RShiny app for the analysis of high-throughput miRNA sequencing data
      R
      •
      Other
      •1•0•0•0•Updated Dec 11, 2025Dec 11, 2025

    • ovo-examples

      Public
      Jupyter Notebook
      •
      MIT License
      •0•2•0•0•Updated Dec 8, 2025Dec 8, 2025

    • ovo-promb

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Dec 8, 2025Dec 8, 2025

    • InCytokine

      Public
      The Cytokine Array Assay is an automated image analysis tool designed to process cytokine array images and extract quantitative data from them. This tool analyz…
      Python
      •
      MIT License
      •0•1•0•0•Updated Dec 1, 2025Dec 1, 2025

    • eligmodel

      Public
      This package focuses about analyzing real-world data patients by clinical trial eligibility status (eligible, ineligible, or unknown due to missing data) and it…
      R
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Nov 25, 2025Nov 25, 2025

    • MGtree

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Nov 25, 2025Nov 25, 2025

    • obsidian

      Public
      Algorithmic process optimization and AI experiment design
      optimizationbayesian-optimizationactive-learningprocess-design
      Python
      •
      GNU General Public License v3.0
      •8•44•12•4•Updated Nov 21, 2025Nov 21, 2025

    • PepThink-R1

      Public
      LLM for Interpretable Cyclic Peptide Optimization with CoT SFT and Reinforcement Learning
      Jupyter Notebook
      •
      Other
      •1•3•2•0•Updated Nov 18, 2025Nov 18, 2025

    • cpk

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Nov 14, 2025Nov 14, 2025

    • kmcurvely

      Public
      R
      •
      GNU General Public License v3.0
      •0•2•6•0•Updated Oct 29, 2025Oct 29, 2025

    • stan_hbm

      Public
      This code may accompany the publication of papers on HBM for basket trials.
      R
      •
      MIT License
      •0•1•0•0•Updated Sep 9, 2025Sep 9, 2025

    • DSSI-IDA-GraphTox

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Sep 5, 2025Sep 5, 2025

    • DRAGoN

      Public
      DRUG-seq (Digital RNA with pertUrbation of Genes) [1] is a new technique that provides a cost-effective way for high-throughput, whole transcriptome RNA-seq pro…
      Python
      •
      MIT License
      •2•8•1•1•Updated Sep 4, 2025Sep 4, 2025

    • QComp

      Public
      A robust, interpretable, non-iterative data completion framework for sparse datasets in drug discovery.
      Jupyter Notebook
      •
      Other
      •3•3•0•0•Updated Aug 11, 2025Aug 11, 2025

    • promb

      Public
      Humanness of de-novo designed proteins
      Jupyter Notebook
      •
      MIT License
      •6•39•3•1•Updated May 19, 2025May 19, 2025

    • dedenser

      Public
      A Python tool for creating and downsampling chemical pointclouds.
      Python
      •
      Other
      •2•12•0•1•Updated Apr 18, 2025Apr 18, 2025

    • dre-rave-ms

      Public
      RAVE MS is a web application that provides a series of pre-programmed protocols and commands to the SIELC Alltesta™ (https://sielc.com/alltesta-gradient-automat…
      Python
      •
      Other
      •0•0•0•0•Updated Apr 14, 2025Apr 14, 2025

    • binding-pose-metadynamics

      Public
      Python script to run binding pose metadynamics workflow to score conformational stability of macrocyclic peptides using Desmond in Schrodinger.
      Python
      •
      Other
      •0•3•0•0•Updated Mar 21, 2025Mar 21, 2025