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    390 repositories

    • DRC-Portals

      Public
      This repo has the code for the CFDE Workbench. The workbench serves the CFDE Information Portal and the CFDE Data Portal
      ot2od036435
      TypeScript
      •0•1•12•2•Updated Feb 20, 2026Feb 20, 2026

    • ChEA-KG

      Public
      Demo of how to build a transcription factor KG using the KG UI
      Jupyter Notebook
      •13•1•0•0•Updated Feb 20, 2026Feb 20, 2026

    • Knowledge-Graph-UI

      Public
      Knowledge-Graph-UI (KG-UI) is an open-source web-based user interface built for KGs stored in Neo4j. The UI features Cypher queries for viewing immediate neighb…
      neo4jneo4j-databaseknowledge-graphcytoscapenetworksuser-interfacegeneset-enrichmentcytoscapejscypher-query-languagenetworkscience
      TypeScript
      •
      Other
      •19•20•5•1•Updated Feb 18, 2026Feb 18, 2026

    • drc-static

      Public
      Jupyter Notebook
      •0•0•0•1•Updated Feb 17, 2026Feb 17, 2026

    • D2H2-site

      Public
      HTML
      •
      Other
      •0•0•0•1•Updated Feb 17, 2026Feb 17, 2026

    • appyter

      Public
      jinja2-enabled jupyter notebooks
      Python
      •
      Other
      •6•37•15•14•Updated Feb 13, 2026Feb 13, 2026

    • cfde-c2m2

      Public
      A collection of utilities for simplifying the C2M2 submission process.
      Python
      •0•3•0•0•Updated Feb 13, 2026Feb 13, 2026

    • ChEA-KG-UI

      Public
      Knowledge-Graph-UI (KG-UI) is an open-source web-based user interface built for KGs stored in Neo4j. The UI features Cypher queries for viewing immediate neighb…
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •19•1•0•0•Updated Feb 11, 2026Feb 11, 2026

    • k8s-docs

      Public
      Ma'ayanlab k8s server admin and user guide
      Python
      •
      Other
      •1•0•0•0•Updated Feb 6, 2026Feb 6, 2026

    • HarmonizomePythonScripts

      Public
      Jupyter Notebook
      •10•28•0•1•Updated Feb 6, 2026Feb 6, 2026

    • maayanlab-bioinformatics

      Public
      A collection of useful functions for bioinformatics data analysis
      Python
      •
      Apache License 2.0
      •2•25•0•0•Updated Feb 5, 2026Feb 5, 2026

    • xalign

      Public
      Hassle-free RNA-seq alignment
      Python
      •
      Apache License 2.0
      •1•0•0•0•Updated Jan 28, 2026Jan 28, 2026

    • gsfm-predictions

      Public
      TypeScript
      •0•0•4•0•Updated Jan 27, 2026Jan 27, 2026

    • ihdh_frontend

      Public
      Innovative Health Data Hub (IHDH) frontend
      JavaScript
      •0•0•6•0•Updated Jan 26, 2026Jan 26, 2026

    • datacrossways_api

      Public
      Oauth flask server
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Jan 26, 2026Jan 26, 2026

    • gsfm

      Public
      The gene set foundation model training, evaluation, and benchmark code.
      Jupyter Notebook
      •0•0•0•0•Updated Jan 23, 2026Jan 23, 2026

    • FAIRshakeInsignia

      Public
      A separate repository for the FAIRshake Insignia Client Javascript Library
      JavaScript
      •
      Other
      •1•0•0•13•Updated Jan 22, 2026Jan 22, 2026

    • Enrichr-Viz-Appyter

      Public
      Appyter for enrichr canvases, scatter plots, and Manhattan plots
      Jupyter Notebook
      •2•0•3•1•Updated Jan 21, 2026Jan 21, 2026

    • Playbook-Workflow-Builder

      Public
      A repository for the Playbook Workflow Builder project.
      workflowdata-sciencebioinformaticsgene-setsbiologysystems-biologygene-expressiongene-ontologyproteomicscwl
      TypeScript
      •
      Creative Commons Attribution 4.0 International
      •19•25•40•0•Updated Jan 20, 2026Jan 20, 2026

    • L2S2

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •0•1•2•1•Updated Jan 14, 2026Jan 14, 2026

    • archs4dx

      Public
      JavaScript
      •
      Apache License 2.0
      •0•1•7•0•Updated Jan 7, 2026Jan 7, 2026

    • chea_kg_ts_appyter

      Public
      JavaScript
      •0•0•2•0•Updated Dec 19, 2025Dec 19, 2025

    • croissant-scripts

      Public
      Croissant processing scripts and files for CFDE and Harmonizome datasets
      Jupyter Notebook
      •0•0•0•0•Updated Dec 18, 2025Dec 18, 2025

    • Biomarker-KG-UI

      Public
      Knowledge-Graph-UI (KG-UI) is an open-source web-based user interface built for KGs stored in Neo4j. The UI features Cypher queries for viewing immediate neighb…
      TypeScript
      •
      Other
      •19•0•0•0•Updated Dec 12, 2025Dec 12, 2025

    • appyter-catalog

      Public
      A catalog of appyter notebooks
      Jupyter Notebook
      •
      Other
      •48•41•25•5•Updated Dec 10, 2025Dec 10, 2025

    • sc2DAT

      Public
      JavaScript
      •0•1•2•0•Updated Nov 21, 2025Nov 21, 2025

    • datadistillery-kg

      Public
      Jupyter Notebook
      •0•0•4•0•Updated Nov 18, 2025Nov 18, 2025

    • proxy

      Public
      A convenient and generic proxy image
      Shell
      •
      Apache License 2.0
      •1•0•0•0•Updated Oct 31, 2025Oct 31, 2025

    • mcp-template

      Public
      template for mcp server using the typescript sdk
      TypeScript
      •0•0•0•0•Updated Oct 27, 2025Oct 27, 2025

    • cfde-wheel

      Public
      Documentation for CFDE Navigation Wheel
      TypeScript
      •
      Other
      •2•1•1•2•Updated Oct 21, 2025Oct 21, 2025