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@Matthijnssenslab Lab of Viral Metagenomics

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    23 repositories

    • Leuven_ww_long

      Public
      Scripts and data to reproduce our study on wastewater viral metagenomics in Leuven.
      R
      •
      MIT License
      •0•0•0•0•Updated Jan 31, 2026Jan 31, 2026

    • Bangladesh_InfGut_16S

      Public
      Bangladeshi infant gut microbiota study (16S rRNA data)
      0•0•0•0•Updated Jan 30, 2026Jan 30, 2026

    • Indoorair_daycare

      Public
      Indoor air longitudinal surveillance study
      R
      •0•0•0•0•Updated Dec 18, 2025Dec 18, 2025

    • ViPER

      Public
      Bioinformatics pipeline used in the Laboratory of Viral Metagenomics (KU Leuven) to trim and assemble paired-end Illumina reads, and classify resulting contigs.
      Python
      •
      GNU General Public License v3.0
      •7•9•0•0•Updated Nov 6, 2025Nov 6, 2025

    • Tomato_virome

      Public
      Metagenomics study of the commercial tomato virome focused on virus species of epidemiological interest
      R
      •0•0•0•0•Updated Oct 2, 2025Oct 2, 2025

    • NRC_Belgium24

      Public
      National Reference Center for Rotaviruses in Belgium. Research material, codes and data linked to study.
      R
      •0•0•0•0•Updated Jun 23, 2025Jun 23, 2025

    • WW_BE_animalviruses

      Public
      Scripts and data to reproduce our figures in our study.
      R
      •0•0•1•0•Updated Jun 23, 2025Jun 23, 2025

    • 2025_VirusEvolution_BlackflyVirome

      Public
      Code to generate figures for the blackfly virome paper.
      Jupyter Notebook
      •0•0•0•0•Updated Mar 7, 2025Mar 7, 2025

    • BlackSoldierFlies

      Public
      Virome exploration in black soldier flies
      R
      •0•0•0•0•Updated Feb 16, 2025Feb 16, 2025

    • 2024_mSystems_BelgianMosquitoVirome

      Public
      Jupyter Notebook
      •0•2•0•0•Updated Jan 28, 2025Jan 28, 2025

    • CameroonMosquitoVirome

      Public
      R
      •0•0•0•0•Updated Jul 13, 2024Jul 13, 2024

    • Beestat

      Public
      Code for the absolute virus quantification on EpiloBEE samples in Belgium.
      R
      •0•1•0•0•Updated Apr 7, 2024Apr 7, 2024

    • IBDVirome

      Public
      Virome in IBD patients
      R
      •0•2•0•0•Updated Feb 16, 2024Feb 16, 2024

    • Introduction-to-R

      Public
      HTML
      •0•0•0•0•Updated Nov 22, 2023Nov 22, 2023

    • BabyGutVirome

      Public
      BabyGutVirome
      0•2•0•0•Updated Oct 28, 2022Oct 28, 2022

    • tutorial_images

      Public
      Repo with images for an in-house tutorial. This repo provides the absolute paths to the images in a html-file/jupyter notebook.
      0•0•0•0•Updated Mar 8, 2022Mar 8, 2022

    • Bee_euvir

      Public
      Jupyter Notebook
      •1•0•0•0•Updated Jan 21, 2022Jan 21, 2022

    • MosquitoMicrobiome

      Public
      HTML
      •0•1•0•0•Updated Nov 4, 2021Nov 4, 2021

    • ViromeCatalogue

      Public
      Danish Enteric Virome Catalogue - MicrobLiver
      0•0•0•0•Updated Aug 9, 2021Aug 9, 2021

    • BabyGut16S

      Public
      1•0•0•0•Updated Oct 19, 2020Oct 19, 2020

    • AedesVirome

      Public
      Guadeloupe mosquito virus and Phasi Charoen-like phasivirus identified in Aedes virome datasets from SRA
      0•0•0•0•Updated Jul 9, 2020Jul 9, 2020

    • Beevir

      Public
      collection of jp books / scripts.
      Jupyter Notebook
      •0•2•0•0•Updated May 7, 2020May 7, 2020

    • zipcode-belgium

      Public
      zip code, longitude / latitude of belgian cities | code postal, longitude / latitude des communes belges
      PHP
      •86•0•0•0•Updated Dec 5, 2017Dec 5, 2017