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    95 repositories

    • rocker-ultra

      Public
      Containerised RStudio with bells+whistles for HPC and everywhere
      Dockerfile
      •
      GNU General Public License v2.0
      •3•4•5•2•Updated Sep 12, 2025Sep 12, 2025

    • RNAseq_workshop

      Public
      HTML
      •1•1•0•0•Updated Sep 3, 2025Sep 3, 2025

    • monashbioinformaticsplatform.github.io

      Public
      Main Page
      HTML
      •0•0•0•0•Updated Aug 29, 2025Aug 29, 2025

    • learning-resource-links

      Public
      An awesome list of learning resources for bioinformatics, genomics and computational biology
      4•18•0•0•Updated Aug 29, 2025Aug 29, 2025

    • scRNAseq_Workshop

      Public
      Single cell RNAseq workshop
      HTML
      •1•0•1•0•Updated Aug 27, 2025Aug 27, 2025

    • Single-Cell-Workshop

      Public
      Half day workshop with 10x
      R
      •
      GNU General Public License v3.0
      •1•1•4•0•Updated Aug 27, 2025Aug 27, 2025

    • SpatialTranscriptomics_SelfTraining

      Public
      Spatial Transcriptomics Self-Training Material
      R
      •0•1•0•0•Updated Aug 26, 2025Aug 26, 2025

    • scRNAseq_Workshop_ABACBS_2024

      Public archive
      Single cell RNAseq workshop for ABACBS 2024
      HTML
      •1•0•0•0•Updated Aug 22, 2025Aug 22, 2025

    • laxy

      Public
      Laxy Genomics Pipelines
      Python
      •
      Apache License 2.0
      •1•3•66•0•Updated Aug 20, 2025Aug 20, 2025

    • RNAseq_workshop_2024

      Public archive
      HTML
      •1•1•1•0•Updated Aug 15, 2025Aug 15, 2025

    • SingleCell_Multiomics_Danio_rerio

      Public
      This repository contains the analysis of single cell multiomics of Danio rerio
      Jupyter Notebook
      •0•0•0•0•Updated Jun 26, 2025Jun 26, 2025

    • bio-ansible

      Public
      Proof of concept to use ansible + Lmod to deploy a bioinformatics server
      ansiblebioinformatics
      Jinja
      •
      Apache License 2.0
      •16•24•1•0•Updated Jun 5, 2025Jun 5, 2025

    • fqdemux

      Public
      A simple Nextflow pipeline for demultiplexing FASTQs
      Nextflow
      •
      MIT License
      •0•0•0•0•Updated Jun 4, 2025Jun 4, 2025

    • varistran

      Public
      R package providing Variance Stabilizing Transformations appropriate for RNA-Seq data
      R
      •
      GNU Lesser General Public License v2.1
      •3•21•0•0•Updated May 23, 2025May 23, 2025

    • .github

      Public
      the github for Monash Bioinformatics Platform is the repository for the Bioinformatics Node of Monash Genomics and Bioinformatics Platform.
      0•0•0•0•Updated Mar 4, 2025Mar 4, 2025

    • polyApipe

      Public
      polyApipe
      R
      •
      GNU Lesser General Public License v2.1
      •6•18•5•0•Updated Feb 10, 2025Feb 10, 2025

    • laxyapi-r

      Public
      Interace with the Laxy REST API in R. Download your job files.
      R
      •
      MIT License
      •0•2•0•0•Updated Dec 13, 2024Dec 13, 2024

    • r-intro-resbazvic2024

      Public
      Introduction to R workshop material for ResBaz Victoria 2024
      rworkshop
      R
      •14•0•0•0•Updated Dec 11, 2024Dec 11, 2024

    • Functional_Enrichment_BioCommons_2024

      Public
      Materials and resources for a 2-day workshop on functional enrichment analysis, organised by Australian BioCommons and delivered by Monash University and the University of Sydney.
      HTML
      •2•3•0•0•Updated Nov 21, 2024Nov 21, 2024

    • VEPvcf_parser

      Public
      R
      •0•0•0•0•Updated Nov 12, 2024Nov 12, 2024

    • provean

      Public archive
      Fork of Provean tool from : http://provean.jcvi.org
      C++
      •
      Other
      •1•6•0•0•Updated Aug 13, 2024Aug 13, 2024

    • LFQ-Analyst

      Public
      The repo for LFQ-Analyst
      statistical-analysisproteomicsmass-spectrometryshinydashboard
      HTML
      •
      GNU General Public License v3.0
      •14•30•5•0•Updated Aug 7, 2024Aug 7, 2024

    • containers

      Public
      A repository for all our tool Dockerfiles
      Dockerfile
      •
      MIT License
      •0•0•2•0•Updated Jul 12, 2024Jul 12, 2024

    • Nov2023_scRNAseq_workshop

      Public
      HTML
      •2•0•1•0•Updated May 5, 2024May 5, 2024

    • enrichment_analysis_workshop_2024

      Public
      A base for enrichment analysis workshop material
      HTML
      •1•0•0•0•Updated Mar 20, 2024Mar 20, 2024

    • enrichment_analysis_workshop

      Public
      A base for enrichment analysis workshop material
      HTML
      •1•2•1•0•Updated Mar 15, 2024Mar 15, 2024

    • RNAsik-pipe

      Public
      RNAsik - more than just a pipeline
      TeX
      •
      Apache License 2.0
      •6•13•25•1•Updated Feb 6, 2024Feb 6, 2024

    • PBMC-Single-Cell-Workshop-2022

      Public
      This workshop, conducted by the Monash Bioinformatics Platform, will cover the Seurat 3K PBMC tutorial with an extended section on how to use third party tools SingleR and Harmony
      R
      •
      GNU General Public License v3.0
      •1•0•5•0•Updated Nov 15, 2023Nov 15, 2023

    • sc-hyp-org

      Public
      This repository contains detailed code for the analysis of scRNAseq data
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 21, 2023Sep 21, 2023

    • R-ShinyIntro-MBP

      Public
      https://monashbioinformaticsplatform.github.io/R-ShinyIntro-MBP/
      HTML
      •5•2•1•0•Updated Jul 4, 2023Jul 4, 2023