Repositories list

• MultiQC

  Public
  Aggregate results from bioinformatics analyses across many samples into a single report.

  pythonbioinformaticsquality-control+ 8analysisreportingpypidata-visualizationbiocondamultiqcvizualisation+ 1

  JavaScript

  •

  GNU General Public License v3.0

  •653•1.4k•215•62•Updated Feb 21, 2026Feb 21, 2026

• test-data

  Public
  Test data for MultiQC.

  bioinformaticsmultiqctest-data+ 1bioinformatics-data

  HTML

  •

  MIT License

  •156•24•0•15•Updated Feb 21, 2026Feb 21, 2026

• stats

  Public
  Automated statistics for MultiQC contributions

  Python

  •

  MIT License

  •0•1•0•0•Updated Feb 15, 2026Feb 15, 2026

• MultiQC_SAV

  Public
  MultiQC plugin replicating the most used plots and tables from Illumina's SAV

  Python

  •

  MIT License

  •2•9•2•0•Updated Dec 18, 2025Dec 18, 2025

• xenium-extra

  Public
  Additional MultiQC report sections for 10x Genomics Xenium data.

  multiqcsingle-cell10xgenomics+ 2multiqc-pluginxenium

  Python

  •

  MIT License

  •0•1•0•0•Updated Dec 18, 2025Dec 18, 2025

• api.multiqc.info

  Public
  Code for basic MultiQC API service, providing run-time information about available updates.

  apimultiqc

  Python

  •

  MIT License

  •1•0•1•4•Updated Dec 18, 2025Dec 18, 2025

• evals

  Public
  Comparing formats, stores, and query engines for MegaQC

  Jupyter Notebook

  •0•0•0•0•Updated Jun 19, 2025Jun 19, 2025

• example-timeline

  Public
  Example of usig MultiQC parquet intermediate files to plot timelines across many runs

  Jupyter Notebook

  •0•0•0•0•Updated May 30, 2025May 30, 2025

• example-streamlit

  Public
  Example of using MultiQC within a Streamlit app

  Python

  •2•0•0•0•Updated May 19, 2025May 19, 2025

• example-notebook

  Public
  Example of using MultiQC within a Jupyter Notebook

  HTML

  •

  MIT License

  •2•2•1•1•Updated Apr 29, 2025Apr 29, 2025

• example-plugin

  Public template
  A miniature example of a MultiQC plugin.

  pythonpluginquality-control+ 5ngsnext-generation-sequencingmultiqcexample-projectmultiqc-plugin

  Python

  •

  MIT License

  •6•8•1•0•Updated Feb 13, 2025Feb 13, 2025

• .github

  Public
  Apache License 2.0

  •0•0•0•0•Updated Feb 13, 2025Feb 13, 2025

• MegaQC

  Public
  Web application to collect and visualise data across multiple MultiQC runs.

  Python

  •

  GNU General Public License v3.0

  •29•95•89•33•Updated Dec 13, 2024Dec 13, 2024

• website

  Public archive
  Website files for MultiQC

  websitemultiqc

  HTML

  •

  MIT License

  •1•2•0•0•Updated Dec 8, 2024Dec 8, 2024

• MegaQC_website

  Public
  Website files for MegaQC.

  SCSS

  •

  Other

  •1•1•2•0•Updated Dec 19, 2023Dec 19, 2023

• logo

  Public
  MultiQC logo and branding information

  logomultiqccolours+ 1branding

  0•0•0•0•Updated Dec 18, 2023Dec 18, 2023

• MultiQC_NGI

  Public
  MultiQC plugin for the National Genomics Infrastructure in Stockholm, Sweden.

  pythonbioinformaticsanalysis+ 1multiqc

  Python

  •

  MIT License

  •11•4•0•0•Updated Aug 4, 2023Aug 4, 2023

• custom_images_tsv

  Public
  Plugin to insert images in a MultiQC report

  Python

  •1•0•0•0•Updated Aug 23, 2021Aug 23, 2021

• MultiQC_bcbio

  Public
  MultiQC plugin for bcbio_nextgen pipeline

  Python

  •

  MIT License

  •4•10•0•0•Updated Oct 29, 2020Oct 29, 2020

• MultiQC_Clarity

  Public
  MultiQC plugin interacting with the Illumina Genologics Clarity LIMS

  bioinformaticslimssequencing+ 5next-generation-sequencingmultiqcilluminaclaritygenologics

  Python

  •

  MIT License

  •5•1•2•0•Updated Feb 14, 2019Feb 14, 2019

• OSXApp

  Public archive
  Files and config for OS X wrapper around MultiQC. See https://github.com/ewels/MultiQC

  Python

  •

  MIT License

  •0•0•0•0•Updated Mar 3, 2016Mar 3, 2016

• publication

  Public archive
  Source for paper describing MultiQC. See main repository here: https://github.com/ewels/MultiQC

  HTML

  •0•0•0•0•Updated Jan 5, 2016Jan 5, 2016