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    78 repositories

    • DTIPlayground

      Public
      An integrated framework for DWI Image QC and processing
      Python
      •
      MIT License
      •2•13•8•0•Updated Feb 19, 2026Feb 19, 2026

    • SPHARM-PDM

      Public
      Shape analysis has become of increasing interest to the medical community due to its potential to precisely locate morphological changes between healthy and pat…
      decompositionspherical-harmonics3d-models3d-slicer-extension
      C++
      •
      Apache License 2.0
      •23•54•8•0•Updated Nov 4, 2025Nov 4, 2025

    • 3DMetricTools

      Public
      3DMeshMetric is a visualization tool that computes and displays surface-to-surface distance between two triangle meshes using user-specified uniform sampling (b…
      statistics3d-models3d-slicer-extension
      C++
      •
      Apache License 2.0
      •12•7•2•0•Updated Nov 4, 2025Nov 4, 2025

    • ShapePopulationViewer

      Public
      ShapePopulationViewer is a software that allows you to dynamically interact with multiple surfaces at the same time
      visualizationpopulation3d-modelscolor-mapping3d-slicer-extension
      C++
      •
      Apache License 2.0
      •17•2•2•1•Updated Nov 3, 2025Nov 3, 2025

    • BrainKeychainAutomation

      Public
      Python
      •
      BSD 2-Clause "Simplified" License
      •1•1•0•0•Updated Apr 21, 2025Apr 21, 2025

    • DTIPlaygroundLab

      Public
      DTIPlayground Web UI Project
      Vue
      •2•0•0•0•Updated Apr 4, 2025Apr 4, 2025

    • ds-analysis

      Public
      Repository containing all notebooks and scripts for Down Syndrome analysis
      Jupyter Notebook
      •2•0•0•0•Updated Feb 28, 2025Feb 28, 2025

    • braintypicality-scripts

      Public
      Scripts for processing and running MSMA models on brain data
      Jupyter Notebook
      •2•0•0•0•Updated Feb 25, 2025Feb 25, 2025

    • sade

      Public
      Score-based models for anomaly detection, focused on 3D brain MRIs
      Jupyter Notebook
      •
      MIT License
      •2•1•0•0•Updated Feb 25, 2025Feb 25, 2025

    • SAXIBrainSurfaceQCSlicerExtension

      Public
      Quality Control Model
      Python
      •1•0•0•0•Updated Oct 1, 2024Oct 1, 2024

    • categorical-dsm

      Public
      Denoising Score Matching for Categorical Data
      Jupyter Notebook
      •2•0•0•0•Updated Sep 30, 2024Sep 30, 2024

    • SlicerSurfaceLearner

      Public
      A Slicer extension to apply convolutional neural network based classifiers on surface meshes (e.g. brain surface)
      Shell
      •5•0•0•0•Updated Jun 28, 2024Jun 28, 2024

    • MeshToLabelMap

      Public
      3d-slicer-extension
      C++
      •
      Apache License 2.0
      •7•7•3•0•Updated Jun 14, 2024Jun 14, 2024

    • NeuroRuler

      Public
      A program that calculates head circumference from MRI data (.nii, .nii.gz, .nrrd).
      Python
      •
      MIT License
      •4•8•19•0•Updated May 15, 2024May 15, 2024

    • NeosegPipeline

      Public
      This tool allows segmentin brain MRI using a multi-atlas based approach either via joint label fusion (ANTS) or via generating a subject-specific atlas.
      C++
      •
      Apache License 2.0
      •8•6•6•0•Updated Apr 2, 2024Apr 2, 2024

    • MUMMI

      Public
      MUlti-Modality Mri Imputation
      Apache License 2.0
      •0•0•0•0•Updated Feb 28, 2024Feb 28, 2024

    • DTIProcessToolkit

      Public
      DTIProcess is a DTI processing and analysis toolkit developed in UNC and University of Utah
      estimationdiffusion-mri3d-slicer-extension
      C++
      •
      Apache License 2.0
      •8•7•2•0•Updated Oct 26, 2023Oct 26, 2023

    • dcm_to_bids

      Public
      Converts a dicom directory to bids format
      Python
      •
      Apache License 2.0
      •0•0•3•0•Updated Aug 22, 2023Aug 22, 2023

    • BreezeStyleSheets

      Public
      Breeze/BreezeDark-like Qt StyleSheets
      Python
      •
      MIT License
      •133•1•0•0•Updated May 6, 2023May 6, 2023

    • GROUPS

      Public
      Group wise registration for 3d-models
      registration3d-models3d-slicer-extension
      C++
      •
      Apache License 2.0
      •11•0•4•0•Updated Apr 3, 2023Apr 3, 2023

    • SurfRemesh

      Public
      C++
      •6•0•0•1•Updated Apr 3, 2023Apr 3, 2023

    • RigidAlignment

      Public
      Rigid alignment of landmarks on the unit sphere
      3d-slicer-extension
      C++
      •
      Apache License 2.0
      •5•1•0•0•Updated Apr 3, 2023Apr 3, 2023

    • DTIAtlasBuilder

      Public
      This tool creates an Atlas image as an average of several DTI images that will be registered
      C++
      •
      Apache License 2.0
      •6•7•2•0•Updated Feb 3, 2023Feb 3, 2023

    • DTIPlaygroundNative

      Public
      DTIPlayground Native
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 30, 2023Jan 30, 2023

    • MIDLLatexTemplate

      Public
      Latex template for the MIDL Conference
      TeX
      •103•0•0•0•Updated Jan 10, 2023Jan 10, 2023

    • MeshValmet

      Public
      MeshValmet is a tool that measures surface to surface distance between two triangle meshes using user-specified uniform sampling
      C++
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Dec 2, 2022Dec 2, 2022

    • SLCN_challenge_UNC

      Public
      This repository contains the code used for the Surface Learning For Clinical Neuroscience
      Python
      •1•0•0•0•Updated Aug 31, 2022Aug 31, 2022

    • DTIPlaygroundTools

      Public
      DTIPlayground required toolset build script
      CMake
      •
      Apache License 2.0
      •1•0•0•0•Updated Aug 11, 2022Aug 11, 2022

    • Local_EACSF

      Public
      C++
      •
      Apache License 2.0
      •3•0•2•0•Updated Apr 15, 2022Apr 15, 2022

    • ReadImageHeader

      Public
      Small tool to print (ITK) image header information. It can also be used to convert an image into a different format.
      C++
      •2•0•0•0•Updated Feb 25, 2022Feb 25, 2022