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    • Tornado server for tracking samples at NGI Stockholm
      JavaScript
      201204Updated Feb 23, 2026Feb 23, 2026
    • ngi-firn

      Public
      A laboratory freezer inventory management system created with Nuxt4, Vue and UnaUI.
      Vue
      2200Updated Feb 23, 2026Feb 23, 2026
    • A GitHub action to fetch a random selection of publications to display on the website
      HTML
      0007Updated Feb 23, 2026Feb 23, 2026
    • Ansible playbooks for provisioning NGI cluster Miarka
      Jinja
      16162Updated Feb 23, 2026Feb 23, 2026
    • HTML
      1000Updated Feb 20, 2026Feb 20, 2026
    • taca-ngi-pipeline

      Public
      A TACA plugin adding functionality relevant for the ngi_pipeline
      Python
      14310Updated Feb 20, 2026Feb 20, 2026
    • Yggdrasil

      Public
      Yggrasil is middleware platform designed to aggregate sample-related metadata, manage the execution of various pipelines for processing sequencing data, and ult…
      Python
      3000Updated Feb 19, 2026Feb 19, 2026
    • Python script to dynamically generate the bioinfo production checklists for QC, Delivery and Close of NGI sequencing projects
      Python
      2200Updated Feb 17, 2026Feb 17, 2026
    • A collection of Genologics Clarity LIMS EPPs used at Scilifelab.
      Python
      16602Updated Feb 17, 2026Feb 17, 2026
    • Tool for transferring data from NAS to HPC
      Python
      2001Updated Feb 9, 2026Feb 9, 2026
    • Code to generate reports for use by the NGI in SciLifeLab
      Python
      14500Updated Feb 9, 2026Feb 9, 2026
    • TACA

      Public
      Tool for the Automation of Cleanup and Analyses: tools for projects and data management at NGI Stockholm
      Python
      201431Updated Feb 4, 2026Feb 4, 2026
    • Prototype of a possible new static NGI landing page built with Nuxt.
      Vue
      1000Updated Jan 28, 2026Jan 28, 2026
    • Wordpress theme and plugins for https://ngisweden.se
      PHP
      9010Updated Jan 26, 2026Jan 26, 2026
    • Repository to store standalone scripts that do not belong to any bigger package or repository
      Python
      23501Updated Jan 15, 2026Jan 15, 2026
    • MultiQC plugin for the National Genomics Infrastructure in Stockholm, Sweden.
      Python
      11400Updated Jan 8, 2026Jan 8, 2026
    • LIMS2DB

      Public
      Python
      13100Updated Dec 22, 2025Dec 22, 2025
    • NGI fork of the original nf-core/rnaseq pipeline. May have minor bugfixes for running the pipeline on the NGI used HPC.
      Nextflow
      848001Updated Dec 18, 2025Dec 18, 2025
    • Holds test data to fire up a dev instance of statusdb
      Dockerfile
      2001Updated Dec 4, 2025Dec 4, 2025
    • SciLifeLab NGI Dashboard Code
      HTML
      7170Updated Nov 27, 2025Nov 27, 2025
    • dmx

      Public
      Helper scripts for demultiplexing
      Python
      3000Updated Nov 26, 2025Nov 26, 2025
    • irma-provision

      Public archive
      Ansible playbooks for provisioning NGI pipeline and related sw
      Jinja
      17100Updated Nov 19, 2025Nov 19, 2025
    • Code driving the production pipeline at SciLifeLab
      Python
      267220Updated Nov 10, 2025Nov 10, 2025
    • DailyRead

      Public
      The NGI Daily Read
      Python
      2020Updated Nov 6, 2025Nov 6, 2025
    • Collection of python scripts to parse Illumina (demux with bcl2fastq v2.17+) output
      Python
      18710Updated Nov 5, 2025Nov 5, 2025
    • Python
      6000Updated Nov 3, 2025Nov 3, 2025
    • radQC

      Public
      Pipeline for QC of RAD-seq data
      Nextflow
      1520Updated Oct 22, 2025Oct 22, 2025
    • Filtes related benchmarking scWGS kits at NGI Stockholm 2025
      HTML
      1000Updated Oct 9, 2025Oct 9, 2025
    • charon

      Public
      Database for IGN projects and samples, with RESTful interface. Built on top of Tornado and CouchDB.
      Python
      10340Updated Oct 7, 2025Oct 7, 2025
    • userman

      Public
      Simple user account handling system for use with web services. Built on top of Tornado and CouchDb.
      Python
      3000Updated Oct 3, 2025Oct 3, 2025