Skip to content

@Neural-Systems-at-UIO NeSys at UiO

Change the repository type filter

All

    Repositories list

    61 repositories

    • SeriesZoom

      Public
      HTML
      •
      MIT License
      •1•0•0•0•Updated Feb 23, 2026Feb 23, 2026

    • LocaliZoom

      Public
      Localizoom viewer https://localizoom.readthedocs.io
      HTML
      •
      MIT License
      •2•4•13•0•Updated Feb 22, 2026Feb 22, 2026

    • LocaliView

      Public
      Pipeline for rodent brain section images annotation and registration to reference 3D atlases
      JavaScript
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Feb 18, 2026Feb 18, 2026

    • nutil

      Public
      https://nutil.readthedocs.io/en/latest/
      C++
      •
      GNU General Public License v3.0
      •6•13•22•1•Updated Feb 18, 2026Feb 18, 2026

    • VisuAlign

      Public
      Online manual: https://visualign.readthedocs.io
      Java
      •
      MIT License
      •3•2•17•0•Updated Feb 18, 2026Feb 18, 2026

    • QCAlign

      Public
      https://qcalign.readthedocs.io/
      Java
      •
      MIT License
      •2•1•4•0•Updated Feb 18, 2026Feb 18, 2026

    • WebWarp

      Public
      https://webwarp.readthedocs.io
      JavaScript
      •
      MIT License
      •3•1•8•0•Updated Feb 18, 2026Feb 18, 2026

    • WebAlign

      Public
      https://webalign.readthedocs.io
      HTML
      •
      MIT License
      •4•5•15•0•Updated Feb 18, 2026Feb 18, 2026

    • MeshView-for-Brain-Atlases

      Public
      WebGL based mesh viewer with solid slicing and point cloud support. User documentation https://meshview-for-brain-atlases.readthedocs.io
      JavaScript
      •
      MIT License
      •6•9•21•0•Updated Feb 18, 2026Feb 18, 2026

    • QUINT_webtools

      Public
      https://quint-webtools.readthedocs.io
      GNU General Public License v3.0
      •1•0•0•1•Updated Feb 18, 2026Feb 18, 2026

    • CreateZoom

      Public
      CreateZoom API app to handle pyramiding and tiles
      Python
      •
      MIT License
      •2•0•0•0•Updated Feb 16, 2026Feb 16, 2026

    • QuickNII

      Public
      https://quicknii.readthedocs.io
      ActionScript
      •
      MIT License
      •5•8•13•0•Updated Feb 16, 2026Feb 16, 2026

    • webnutil

      Public
      Python
      •0•0•2•0•Updated Feb 16, 2026Feb 16, 2026

    • webilastik

      Public
      A revision of classic ilastik to drop legacy stuff and make it portable
      Python
      •
      MIT License
      •3•0•0•0•Updated Feb 16, 2026Feb 16, 2026

    • PyNutil

      Public
      Python library for brain-wide quantification and spatial analysis.
      Python
      •
      MIT License
      •2•9•7•0•Updated Feb 12, 2026Feb 12, 2026

    • spatial_brain_maps

      Public
      tools for exploring 3D maps of features in the brain
      Python
      •
      MIT License
      •0•2•2•0•Updated Dec 2, 2025Dec 2, 2025

    • quint-frontend

      Public
      JavaScript
      •1•0•0•0•Updated Nov 19, 2025Nov 19, 2025

    • SHAREbrain

      Public
      SHAREbrain is a workflow aimed to help researchers prepare data and metadata in a standardised manner for sharing via the EBRAINS Data & Knowledge service
      MATLAB
      •
      GNU General Public License v2.0
      •1•0•0•0•Updated Nov 14, 2025Nov 14, 2025

    • QuickNII-extras

      Public
      Code snippets and tools for working with QuickNII output
      Java
      •
      MIT License
      •2•0•0•0•Updated Nov 12, 2025Nov 12, 2025

    • ABA_registration

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 5, 2025Nov 5, 2025

    • allen_download_utilities

      Public
      utilities i use when downloading images from the allen institute for brain science
      Python
      •1•0•0•0•Updated Nov 5, 2025Nov 5, 2025

    • interactive_gene_expression

      Public
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 5, 2025Nov 5, 2025

    • QUINT_workflow

      Public
      Documentation: https://quint-workflow.readthedocs.io
      GNU General Public License v3.0
      •2•3•1•0•Updated Nov 4, 2025Nov 4, 2025

    • quint-workbench

      Public
      JavaScript
      •0•0•26•0•Updated Nov 3, 2025Nov 3, 2025

    • neuroglancer

      Public
      neuroglancer fork for build after cscs change
      TypeScript
      •
      Apache License 2.0
      •1•0•0•0•Updated Oct 27, 2025Oct 27, 2025

    • DeepSlice

      Public
      A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.
      Python
      •
      MIT License
      •28•1•0•0•Updated Oct 21, 2025Oct 21, 2025

    • ebrains-2025_metadata-wizard

      Public
      rewriting wizard in vite
      JavaScript
      •1•0•0•0•Updated Oct 14, 2025Oct 14, 2025

    • restrictedaccess_request

      Public
      Automatic email to data custodian informing about submitted request to access externally hosted data
      JavaScript
      •1•0•0•0•Updated Oct 14, 2025Oct 14, 2025

    • Laterality

      Public
      Quantitative analysis of rat and mouse brain data
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Feb 13, 2025Feb 13, 2025

    • ebrains_wizard

      Public
      JavaScript
      •3•0•0•0•Updated Jan 9, 2025Jan 9, 2025