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@NorwegianVeterinaryInstitute Norwegian Veterinary Institute

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    92 repositories

    • shinylims

      Public
      A Python Shiny app for LIMS reporting
      Python
      •
      MIT License
      •0•0•9•0•Updated Mar 9, 2026Mar 9, 2026

    • SPARMVET_VIZ

      Public
      Test Repo to build Visualizations for EU-Galaxy
      Apache License 2.0
      •1•0•0•0•Updated Mar 8, 2026Mar 8, 2026

    • DemultiplexRawSequenceData

      Public
      A workflow automation script: demultiplex the library sequence, run quality checks, deliver to processing and archiving to NIRD
      automationbioinformaticspython3
      automationbioinformaticspython3bioinformatics-pipelinemultiqcbioinformatics-analysisbioinformatics-scriptsfastqcbioinformatics-toolnird-sigma2
      Python
      •
      GNU General Public License v3.0
      •0•2•99•0•Updated Mar 8, 2026Mar 8, 2026

    • py_maskinporten

      Public
      Request a token from Maskinporten - the Norwegian national access control solution for businesses that exchange data
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Mar 6, 2026Mar 6, 2026

    • noRmvet

      Public
      R
      •
      Other
      •0•0•5•0•Updated Feb 25, 2026Feb 25, 2026

    • App_test_evaluation

      Public
      BLCA for evaluating diagnostic tests for Actinobacillus pleuropneumoniae (APP) in swine herds
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Feb 11, 2026Feb 11, 2026

    • NVIpjsr

      Public
      Tools for working with PJSdata
      R
      •
      Other
      •1•0•5•0•Updated Feb 11, 2026Feb 11, 2026

    • laksetap

      Public
      App for reporting salmon and rainbow trout losses in Norway
      salmonid-mortality
      salmonid-mortality
      R
      •
      Apache License 2.0
      •0•1•4•0•Updated Feb 4, 2026Feb 4, 2026

    • diplotopia

      Public
      Nextflow pipeline for analysis of diploid samples
      Nextflow
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•7•0•Updated Jan 23, 2026Jan 23, 2026

    • Nepal

      Public
      NExtflow Pipeline for AmpLicons
      Nextflow
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•17•0•Updated Jan 15, 2026Jan 15, 2026

    • Assemblage

      Public
      Assembly pipeline for prokaryotic genomes
      Nextflow
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•5•0•Updated Jan 14, 2026Jan 14, 2026

    • hafnia_reports_2024

      Public
      Shell
      •0•0•0•0•Updated Jan 9, 2026Jan 9, 2026

    • NVIdb

      Public
      R-package to facilitate the use of the Norwegian Veterinary Institute's databases.
      R
      •
      Other
      •1•0•9•1•Updated Jan 6, 2026Jan 6, 2026

    • OKplan

      Public
      Tools facilitating the planning of surveillance programmes for the NFSA
      R
      •
      Other
      •1•0•1•0•Updated Dec 17, 2025Dec 17, 2025

    • irida-plugin-nvi-IRMA

      Public
      Shell
      •
      Apache License 2.0
      •0•0•8•0•Updated Dec 10, 2025Dec 10, 2025

    • DPI

      Public
      Differences between Pairs of Isolates
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•12•0•Updated Dec 8, 2025Dec 8, 2025

    • NVIpretty

      Public
      Making R-output pretty in accord with NVI graphical profile
      R
      •
      Other
      •2•0•3•0•Updated Dec 8, 2025Dec 8, 2025

    • NVIcheckmate

      Public
      Extension of the R-package checkmate for argument checking adapted to NVIverse
      R
      •
      Other
      •1•0•0•0•Updated Dec 8, 2025Dec 8, 2025

    • NVI_dynamic_linear_models

      Public
      Repository with R-package for running Dynamic Linear Models
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Nov 18, 2025Nov 18, 2025

    • NVIpackager

      Public
      Tools to facilitate development of NVIverse packages
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•0•0•Updated Nov 17, 2025Nov 17, 2025

    • NVIbatch

      Public
      Tools to facilitate the running R-scripts in batchmode at NVI
      R
      •
      Other
      •1•0•5•0•Updated Oct 13, 2025Oct 13, 2025

    • irida-plugin-nvi-MLST

      Public
      Java
      •0•0•14•0•Updated Sep 26, 2025Sep 26, 2025

    • irida_NVI_VIGASP

      Public
      Canada’s Integrated Rapid Infectious Disease Analysis Platform for Genomic Epidemiology
      Java
      •
      Apache License 2.0
      •32•0•0•0•Updated Aug 22, 2025Aug 22, 2025

    • Salmon_SyS_Dashboard

      Public
      Dashboard prototype for mortality monitoring (Syndromic surveillance)
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jul 31, 2025Jul 31, 2025

    • ALPPACA

      Public
      A tooL for Prokaryotic Phylogeny And Clustering Analysis
      pipelinenextflowclustering
      pipelinenextflowclusteringphylogeny
      Nextflow
      •
      BSD 3-Clause "New" or "Revised" License
      •4•13•8•0•Updated Jul 28, 2025Jul 28, 2025

    • Salmon_snRNAseq_ISAV

      Public
      MIT License
      •0•0•0•0•Updated Jul 1, 2025Jul 1, 2025

    • Galaxy_wrapper_FluMut

      Public
      https://github.com/izsvenezie-virology/FluMut
      GNU Affero General Public License v3.0
      •0•0•1•0•Updated Jun 6, 2025Jun 6, 2025

    • Galaxy_wrapper_genin2

      Public
      Galaxy wrapper to create conda recipie to install Genin2. Using same licence as Genin2
      GNU Affero General Public License v3.0
      •0•0•1•0•Updated Jun 6, 2025Jun 6, 2025

    • .github

      Public
      0•0•0•0•Updated Jun 6, 2025Jun 6, 2025

    • irida-plugin-nvi-FluMut

      Public
      Pluging for irida - Flumut
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Jun 5, 2025Jun 5, 2025