Repositories list

• SlicerSandbox

  Public
  Collection of utilities that are not polished implementations but can be useful to users

  Python

  •

  BSD 2-Clause "Simplified" License

  •34•96•13•3•Updated Mar 29, 2026Mar 29, 2026

• LumbarTutor

  Public
  Python

  •1•0•1•0•Updated Feb 10, 2026Feb 10, 2026

• MCSTrack

  Public
  Multi-camera spatial tracking

  Python

  •

  MIT License

  •4•0•19•0•Updated Feb 3, 2026Feb 3, 2026

• SlicerFreeSurfer

  Public
  This repository contains the SlicerFreeSurferImporter extension for 3D Slicer. The extension implements a module for importing models, scalar overlays, and segm…

  3d-slicer-extension

  3d-slicer-extension

  C++

  •

  BSD 3-Clause "New" or "Revised" License

  •5•18•11•0•Updated Nov 13, 2025Nov 13, 2025

• SlicerOpenAnatomy

  Public
  3D Slicer extension for exporting Slicer scenes to use in the OpenAnatomy.org browser

  3d-slicer-extension

  3d-slicer-extension

  Python

  •8•26•6•2•Updated Oct 8, 2025Oct 8, 2025

• PerkLabBootcamp

  Public
  Materials for the yearly PerkLab bootcamp course

  34•97•0•0•Updated Jul 29, 2025Jul 29, 2025

• NephrostomyTutor

  Public
  Python

  •0•0•0•0•Updated Jan 30, 2025Jan 30, 2025

• Benchtop_Imaging_Robot

  Public
  Makefile

  •0•0•0•0•Updated Jan 16, 2025Jan 16, 2025

• aigt-UltrasounfSegmentation

  Public
  Deep learning software modules for image-guided medical procedures

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •48•0•0•0•Updated Oct 12, 2024Oct 12, 2024

• aigt-UltrasoundSegmentation

  Public
  segmentation AI training code

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •48•0•0•0•Updated Sep 16, 2024Sep 16, 2024

• SlicerMatlabBridge

  Public
  MatlabBridge extension for 3D Slicer

  MATLAB

  •10•19•6•0•Updated Apr 23, 2024Apr 23, 2024

• SlicerSkinMouldGenerator

  Public
  3D Slicer extension for generating 3D-printable skin moulds for radiation therapy

  3d-slicer-extension

  3d-slicer-extension

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •3•5•1•0•Updated Apr 23, 2024Apr 23, 2024

• SlicerVolumeClip

  Public
  3D Slicer extension for clipping volume with surface or ROI box

  Python

  •5•0•0•0•Updated Apr 23, 2024Apr 23, 2024

• Spectroscopy_TrackedTissueSensing

  Public
  Codebase for the project titled "Development of a research testbed for intraoperative optical spectroscopy tumour margin assessment" conducted by David Morton 2…

  Jupyter Notebook

  •0•0•29•0•Updated Dec 27, 2023Dec 27, 2023

• SegmentationComparison

  Public
  Python

  •2•2•0•0•Updated Oct 21, 2023Oct 21, 2023

• SpineGuidance

  Public
  Spinal needle guidance based on ultrasound imaging

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•5•1•0•Updated Jul 4, 2023Jul 4, 2023

• PolySeg

  Public
  Library for polymorph segmentation representation for medical image computing

  C++

  •

  BSD 2-Clause "Simplified" License

  •4•28•4•1•Updated Jun 13, 2023Jun 13, 2023

• BreastReconstruction

  Public
  Tool for breast reconstruction surgery planning

  3d-slicer-extension

  3d-slicer-extension

  Python

  •0•2•0•0•Updated Feb 1, 2023Feb 1, 2023

• BootcampSandbox

  Public
  Repository for free experimentation with github

  Python

  •41•2•0•0•Updated May 24, 2022May 24, 2022

• ProstateZoneOverlay

  Public
  Python

  •0•0•0•0•Updated Apr 29, 2022Apr 29, 2022

• TRUS_Trainer

  Public
  Python

  •0•1•0•0•Updated Apr 21, 2022Apr 21, 2022

• LumpNavReplay

  Public
  Tools for analyzing Navigated Lumpectomy data

  Python

  •0•1•0•0•Updated Mar 26, 2021Mar 26, 2021

• ProstateBiopsySim

  Public
  TRUS and prostate biopsy training simulator

  Python

  •0•0•0•0•Updated Nov 27, 2020Nov 27, 2020

• DepthImageToPointCloud

  Public
  This repo contains a slicer module for generating point clouds from static or streamed depth images.

  Python

  •1•5•0•0•Updated May 1, 2020May 1, 2020

• SkullRegistration

  Public
  Tracked ultrasound to make skull registration more accurate.

  Python

  •1•0•0•0•Updated Feb 28, 2020Feb 28, 2020

• AblationPlanner

  Public
  Python

  •0•1•0•0•Updated Feb 7, 2020Feb 7, 2020

• ColonCurvature

  Public
  A set of tools to analyze the curvature of colon segmentations.

  pythonskeletoncurve+ 10

  pythonskeletoncurvesegmentationcurvaturecomputed-tomographypatientscolon3dslicercolon-segmentations+ 3

  Python

  •0•4•0•0•Updated Jan 4, 2020Jan 4, 2020

• CARS2019Tutorial

  Public
  Hands on tutorial for SlicerIGT at CARS 2019. SlicerIGT home page: http://www.slicerigt.org/wp/

  Jupyter Notebook

  •

  Apache License 2.0

  •0•3•0•0•Updated Jun 15, 2019Jun 15, 2019

• OperationPig

  Public
  Instructions for setting up 3D Slicer based "Operation" game for outreach events for kids

  BSD 3-Clause "New" or "Revised" License

  •0•2•0•0•Updated May 14, 2019May 14, 2019

• MirrorredSurfaceDistance

  Public
  Python

  •0•0•0•0•Updated Apr 23, 2019Apr 23, 2019