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@QBRC Quantitative Biomedical Research Center

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    33 repositories

    • ARIA-path

      Public
      Agentic Retrieval-augmented Interpretation and Annotation for pathology
      JavaScript
      •
      Other
      •0•0•0•0•Updated Mar 25, 2026Mar 25, 2026

    • multiTAP

      Public
      Jupyter Notebook
      •
      Other
      •0•1•0•0•Updated Feb 25, 2026Feb 25, 2026

    • seqminer

      Public
      Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R
      C
      •
      Other
      •12•0•0•0•Updated Feb 23, 2026Feb 23, 2026

    • ScopeViewer

      Public
      A Browser-based Solution for Visualizing Spatial Transcriptomics Data
      CSS
      •1•0•0•1•Updated Feb 16, 2026Feb 16, 2026

    • MIDI

      Public
      Michanism Interpretable Drug Gene Interaction Modelling
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Jan 7, 2026Jan 7, 2026

    • SBDH-Reader

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•2•0•0•Updated Nov 20, 2025Nov 20, 2025

    • ImagePseudo

      Public
      Python
      •
      Other
      •2•0•0•0•Updated Oct 15, 2025Oct 15, 2025

    • MetaPrism

      Public
      Taxonomical and Functional Profiling for Shotgun Metagenomic Sequencing
      Perl
      •4•0•0•0•Updated Oct 14, 2025Oct 14, 2025

    • GAS-MIL

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Oct 1, 2025Oct 1, 2025

    • LLMsMultiagentEnsemble

      Public
      Large Language Models powered Multiagent Ensemble
      Jupyter Notebook
      •
      Other
      •0•0•0•0•Updated Oct 1, 2025Oct 1, 2025

    • CSGO

      Public
      Cell Segmentation with Globally Optimized boundaries
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •2•4•1•0•Updated Mar 19, 2025Mar 19, 2025

    • iviewer_laravel_copilot

      Public
      The repository includes both the I-Viewer multi-agents Copilot backend for digital pathology and a user-friendly frontend website, I-Viewer, for managing user a…
      JavaScript
      •
      MIT License
      •1•0•0•0•Updated Sep 18, 2024Sep 18, 2024

    • iviewer_copilot

      Public
      I-Viewer Multi-Agents Copilot Backend for Digital Pathology
      JavaScript
      •
      Other
      •1•1•0•1•Updated Sep 1, 2024Sep 1, 2024

    • VAMPr

      Public
      VAriant Mapping and Prediction of antimicrobial resistance
      Perl
      •4•0•0•0•Updated Mar 2, 2024Mar 2, 2024

    • PIPE-CLIP

      Public
      Python
      •
      Other
      •8•10•7•1•Updated Feb 2, 2024Feb 2, 2024

    • ENA

      Public
      Ensemble Network Aggregation
      R
      •
      Other
      •1•2•5•0•Updated Feb 2, 2024Feb 2, 2024

    • ENA-Research

      Public
      Research Behind Ensemble Network Aggregation
      HTML
      •
      Other
      •0•0•1•0•Updated Feb 2, 2024Feb 2, 2024

    • ProbeMapper-R

      Public
      The R package client for ProbeMapper
      R
      •
      Other
      •2•1•3•0•Updated Feb 2, 2024Feb 2, 2024

    • SCINA

      Public
      SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples
      R
      •
      Other
      •18•0•0•0•Updated Feb 2, 2024Feb 2, 2024

    • HARMONIES

      Public
      A Hybrid Approach for Microbiome Networks Inference via Exploiting Sparsity
      HTML
      •
      Other
      •5•0•0•0•Updated Feb 2, 2024Feb 2, 2024

    • MB-GAN

      Public
      Microbiome Simulation
      Jupyter Notebook
      •
      Other
      •11•0•0•0•Updated Feb 2, 2024Feb 2, 2024

    • BayesSMILES

      Public
      Bayesian Segmentation Modeling for Longitudinal Epidemiological Studies
      C++
      •
      Other
      •3•0•0•0•Updated Feb 2, 2024Feb 2, 2024

    • pathology-images-analysis-using-CNN

      Public
      Scripts for https://www.nature.com/articles/s41598-018-27707-4, using Convolutional Neural Network to detect lung cancer tumor area
      deep-learninglung-cancerpathology-image
      deep-learninglung-cancerpathology-image
      Python
      •
      Other
      •31•1•0•0•Updated Feb 2, 2024Feb 2, 2024

    • FDCE

      Public
      FDCE app source code. Data files available at https://doi.org/10.5061/dryad.95x69p8kq.
      R
      •
      Other
      •2•0•0•0•Updated Feb 2, 2024Feb 2, 2024

    • TESSA

      Public
      Mapping the Functional Landscape of TCR Repertoire
      R
      •
      Other
      •8•0•0•0•Updated Feb 2, 2024Feb 2, 2024

    • QBRC-Somatic-Pipeline

      Public
      QBRC Somatic Mutation Calling Pipeline
      pipelinesomatic-mutations
      pipelinesomatic-mutations
      C
      •
      Other
      •7•0•0•0•Updated Feb 2, 2024Feb 2, 2024

    • DIGREsyn

      Public
      Drug Induced Genomic Residual Effect (DIGRE) model
      HTML
      •
      Other
      •5•0•0•0•Updated Feb 2, 2024Feb 2, 2024

    • Isoplexis_Data_Analysis

      Public
      Python
      •2•0•0•0•Updated Aug 25, 2023Aug 25, 2023

    • SPROD

      Public
      SPROD: Spatial expression profiling de-noising
      Python
      •
      Other
      •4•1•0•0•Updated Jun 15, 2023Jun 15, 2023

    • QBRC_BulkRnaSeqDE

      Public
      Analysis pipeline for bulk RNA-seq data
      alignmentdifferential-expressionbulk-rna-seq
      alignmentdifferential-expressionbulk-rna-seq
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •3•3•0•0•Updated Aug 18, 2022Aug 18, 2022
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