Repositories list

• GPTL

  Public
  Genomic Prediction Using Transfer Learning

  R

  •

  MIT License

  •2•6•0•0•Updated Feb 2, 2026Feb 2, 2026

• quantgen.github.io

  Public
  QuantGen Website

  HTML

  •9•2•0•0•Updated Dec 12, 2025Dec 12, 2025

• G2P-Datasets

  Public
  Genomic Prediction Datasets

  TeX

  •0•1•0•0•Updated Dec 6, 2025Dec 6, 2025

• BGData

  Public
  A Suite of Packages for Analysis of Big Genomic Data

  crangwasr+ 3genomicsgeneticsr-pkg

  R

  •

  Other

  •14•34•1•0•Updated Jan 20, 2025Jan 20, 2025

• BEDMatrix

  Public
  A matrix-like wrapper around PLINK .bed files

  cranrgenomics+ 5geneticsplinkbedr-pkgplink2

  C

  •

  Other

  •2•19•1•0•Updated Sep 6, 2024Sep 6, 2024

• MAIZE-HUB

  Public

  QuantGen/MAIZE-HUB’s past year of commit activity
  0•8•0•0•Updated Aug 20, 2024Aug 20, 2024

• BGDataExt

  Public
  Staging Package for BGData

  R

  •

  Other

  •0•0•0•0•Updated Nov 29, 2023Nov 29, 2023

• LAB-SPRING-2023

  Public
  1•0•0•1•Updated Apr 13, 2023Apr 13, 2023

• USDA_means

  Public

  QuantGen/USDA_means’s past year of commit activity
  R

  •0•0•0•0•Updated Nov 25, 2022Nov 25, 2022

• LAB-Journal-Club-Meetings

  Public
  Links to our weekly journal club meetings

  4•1•0•0•Updated Sep 7, 2022Sep 7, 2022

• LAB-SPRING-2022

  Public
  LAB-MEETING SPRING 2022

  2•0•0•0•Updated Apr 28, 2022Apr 28, 2022

• G2F_RESOURCES

  Public
  R

  •0•1•0•0•Updated Mar 21, 2022Mar 21, 2022

• LAB-FALL-2021

  Public
  0•1•0•0•Updated Jan 13, 2022Jan 13, 2022

• GWASExplorer

  Public
  Explore Results from Genome-Wide Association Analyses

  R

  •

  Other

  •1•2•0•0•Updated Jun 28, 2021Jun 28, 2021

• LAB-SUMMER-2021

  Public
  0•0•0•0•Updated Jun 4, 2021Jun 4, 2021

• LAB-SPRING-2021

  Public
  0•0•0•0•Updated Apr 23, 2021Apr 23, 2021

• LAB-FALL-2020

  Public
  0•0•0•0•Updated Dec 11, 2020Dec 11, 2020

• BEDMatrixCExt

  Public
  Using BEDMatrix at the C level

  C

  •

  BSD Zero Clause License

  •0•0•0•0•Updated Dec 4, 2020Dec 4, 2020

• website

  Public
  Simpler alternative to quantgen.github.io

  HTML

  •0•0•0•0•Updated Nov 7, 2020Nov 7, 2020

• plotlyman

  Public
  Create Manhattan plots using Plotly

  R

  •

  Other

  •1•2•0•0•Updated Oct 25, 2020Oct 25, 2020

• RIntro

  Public
  0•2•0•0•Updated Sep 21, 2020Sep 21, 2020

• LAB-SUMMER-2020

  Public
  R

  •2•1•0•0•Updated Sep 9, 2020Sep 9, 2020

• symDMatrix

  Public
  Partitioned Symmetric Matrices

  cranrgenomics+ 2geneticsr-pkg

  R

  •

  Other

  •0•2•1•0•Updated Aug 2, 2020Aug 2, 2020

• MTM

  Public
  Multivariate Gaussian Models for Genomic and Pedigree Data

  rr-pkg

  R

  •

  Other

  •6•14•1•0•Updated May 23, 2020May 23, 2020

• LinkedMatrix

  Public
  Column-Linked and Row-Linked Matrices

  cranrr-pkg

  R

  •

  Other

  •1•2•0•0•Updated May 22, 2020May 22, 2020

• LAB-SPRING-2020

  Public
  1•0•0•2•Updated Apr 13, 2020Apr 13, 2020

• LAB-SPRING-2019

  Public
  0•0•0•0•Updated Jan 14, 2020Jan 14, 2020

• LAB-FALL-2019

  Public
  1•0•0•0•Updated Jan 14, 2020Jan 14, 2020

• LAB-FALL-2018

  Public
  1•0•0•0•Updated Nov 27, 2018Nov 27, 2018

• LAB-SPRING-2018

  Public
  3•0•0•0•Updated May 8, 2018May 8, 2018