Repositories list

• seqware-bag

  Public
  Ansible playbooks for deploying SeqWare with metadata for Bindle

  Shell

  •

  GNU General Public License v3.0

  •1•0•1•1•Updated Dec 15, 2023Dec 15, 2023

• seqware.github.com

  Public
  SeqWare home pages

  HTML

  •1•1•0•0•Updated Nov 23, 2022Nov 23, 2022

• seqware

  Public
  This is the SeqWare Project's main repo.

  javabioinformaticsngs

  javabioinformaticsngs

  Java

  •

  GNU General Public License v3.0

  •17•29•5•0•Updated Jul 9, 2018Jul 9, 2018

• seqware_whitestar

  Public
  This is the container that houses SeqWare WhiteStar with a minimal set of dependencies

  Apache License 2.0

  •1•2•0•0•Updated Apr 11, 2018Apr 11, 2018

• seqware-sandbox

  Public
  A location where we can explore new SeqWare sub-projects, tools, and prototypes before they are ready for the main repo.

  Java

  •

  GNU General Public License v3.0

  •2•2•0•0•Updated Aug 14, 2016Aug 14, 2016

• seqware_test_environment

  Public
  Sets up a test environment for SeqWare continuous integration testing on Travis-CI

  Shell

  •

  Apache License 2.0

  •0•0•0•0•Updated Aug 10, 2016Aug 10, 2016

• oozie-sge

  Public
  This is a repository for the SeqWare Oozie-SGE plugin. It lives outside of the main SeqWare repository because it's really an extension of Oozie to support SGE…

  Java

  •0•1•0•0•Updated Jun 22, 2016Jun 22, 2016

• documentation_builder

  Public
  This container builds our documentation using nanoc

  0•0•0•0•Updated May 12, 2016May 12, 2016

• unstable.seqware.io

  Public
  Repository for hosting our 1.1 docs in progress

  HTML

  •0•0•0•0•Updated May 6, 2016May 6, 2016

• seqware_full

  Public
  This is the container that houses SeqWare with a full set of dependencies including SGE, Hadoop, and Oozie

  Shell

  •

  Apache License 2.0

  •0•0•0•0•Updated Nov 30, 2015Nov 30, 2015

• public-workflows

  Public
  A place to collaborate on public SeqWare workflows

  Perl

  •3•2•1•1•Updated Jul 21, 2015Jul 21, 2015

• portal

  Public
  Provided as-is, this is the unsupported SeqWare Portal as of the 1.1.0-beta

  0•0•0•0•Updated Jan 7, 2015Jan 7, 2015

• queryengine

  Public
  A HBase backed variant database for performing queries on VCF-style data

  Java

  •

  GNU General Public License v3.0

  •1•4•0•0•Updated Apr 2, 2014Apr 2, 2014