Taschner-Mandl lab @ St. Anna CCRI

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8 repositories

.github
Public
scrna-seq segmentation spatial-analysis
scrna-seq segmentation spatial-analysis single-cell-analysis osteosarcoma fish-classification neuroblastoma snatac-seq
0•0•0•0•Updated Sep 27, 2025Sep 27, 2025
YAP-TAZ_study
Public
scRNA-seq analysis code for the publication Strohmenger et al., 2025
scrna-seq image-analysis
scrna-seq image-analysis
Jupyter Notebook
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MIT License
•0•1•0•0•Updated Jul 10, 2025Jul 10, 2025
NK-NB_study
Public
Code for the publication Rados, Wernig-Zorc et al., 2025
scrna-seq
scrna-seq
R
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MIT License
•0•1•0•0•Updated Jul 10, 2025Jul 10, 2025
SpotSegmentation
Public
Python
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MIT License
•0•0•0•0•Updated Nov 14, 2024Nov 14, 2024
MapMetSC
Public
MAPping METastases in Neuroblastoma - spatially and temporally
quality-control correlation-analysis differential-abundance-analysis
quality-control correlation-analysis differential-abundance-analysis cell-clustering
R
•1•1•0•0•Updated Oct 8, 2024Oct 8, 2024
MapMetIP
Public
Image processing pipeline for multi-modal images
feature-extraction image-registration cellpose-segmentation
feature-extraction image-registration cellpose-segmentation semi-supervised-background-correction
Python
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MIT License
•0•0•0•0•Updated Aug 12, 2024Aug 12, 2024
neuroblastoma
Public
Single-cell transcriptomics and epigenomics unravel the role of monocytes in neuroblastoma bone marrow metastasis
Jupyter Notebook
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MIT License
•2•0•0•0•Updated Dec 11, 2023Dec 11, 2023
DeepFLEX
Public
DeepFLEX: Deep learning-based single-cell analysis pipeline for FLuorescence multiplEX imaging
Python
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MIT License
•2•0•0•0•Updated Jan 26, 2022Jan 26, 2022