The Jackson Laboratory

All

386 repositories

jds-ui-toolkit
Public
The JAX UI Toolkit workspace is a development environment engineered to streamline the creation, testing and deployment of shared UI components and packages acr…
TypeScript
•
MIT License
•0•0•1•0•Updated Mar 16, 2026Mar 16, 2026
voice-stream-io
Public
VoICE streaming service. Allows multiple input file formats to be streamed to POJOS in a very performant way.
Java
•
Apache License 2.0
•0•0•1•1•Updated Mar 13, 2026Mar 13, 2026
geneweaver-api
Public
A system for the integration and analysis of heterogeneous functional genomics data.
genomics analysis functional-genomics
genomics analysis functional-genomics genomic-data-science
Python
•
Apache License 2.0
•0•6•0•1•Updated Mar 12, 2026Mar 12, 2026
geneweaver-db
Public
The GeneWeaver database interaction code.
sql genomics functional-genomics
sql genomics functional-genomics genomic-data-science geneweaver
Python
•
Apache License 2.0
•0•2•0•1•Updated Mar 10, 2026Mar 10, 2026
jax-apml-lrs
Public
Nextflow
•
MIT License
•0•0•0•0•Updated Mar 10, 2026Mar 10, 2026
image-processing-ia
Public
Image Processing with Python
HTML
•
Other
•125•0•0•0•Updated Mar 10, 2026Mar 10, 2026
pdxnet-image-analysis-aacr2022
Public
Regional classification and other analysis of PDXNet H&E images for AACR 2022
Jupyter Notebook
•
MIT License
•0•0•0•0•Updated Mar 9, 2026Mar 9, 2026
hpo-web
Public
a web application to search and navigate the Human Phenotype Ontology (HPO)
groovy angular hpo
groovy angular hpo grails3
HTML
•
Other
•13•14•9•2•Updated Mar 4, 2026Mar 4, 2026
ontology-service
Public
A generic ontology term microservice
Java
•2•9•5•0•Updated Mar 3, 2026Mar 3, 2026
jax-omeroutils
Public
A module and scripts for working with OMERO
omero omero-import imaging-solutions
omero omero-import imaging-solutions
Python
•
GNU General Public License v2.0
•3•6•4•1•Updated Mar 2, 2026Mar 2, 2026
Phenomiser
Public
Phenotype-based Diagnosis Tool for Rare Diseases
Java
•5•13•6•2•Updated Mar 2, 2026Mar 2, 2026
jds-nf-workflows
Public
The Jackson Laboratory Data Science Nextflow based analysis workflows
Nextflow
•
MIT License
•11•25•0•0•Updated Feb 27, 2026Feb 27, 2026
jds-nf-test
Public
Repository for hosting test data for cs-nf-pipelines
MIT License
•0•0•0•0•Updated Feb 27, 2026Feb 27, 2026
NBL1
Public
This is a repository for code used in the manuscript titled "NBL1 Associates with Renal Phenotypes in Mice, but Partial Nbl1 Reduction Does Not Ameliorate Kidne…
R
•
MIT License
•0•0•0•0•Updated Feb 25, 2026Feb 25, 2026
geneweaver-legacy
Public
JavaScript
•0•1•28•1•Updated Feb 23, 2026Feb 23, 2026
ontology-annotation-network
Public
A rest-api to serve a neo4j database of supported ontology annotations.
Java
•
Other
•1•3•0•0•Updated Feb 11, 2026Feb 11, 2026
umi-bulk-rna-simulator
Public
Python
•
MIT License
•0•0•0•0•Updated Feb 2, 2026Feb 2, 2026
2026-04-26-multiomics-course
Public
A course website for the Short Course on Methods for Multiomics Analysis, April 26-May in Bar Harbor
HTML
•
Other
•0•0•0•0•Updated Jan 30, 2026Jan 30, 2026
STQ
Public
Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images
spatial-transcriptomics rna-velocity visium
spatial-transcriptomics rna-velocity visium xenome he-stained-wsi xengsort species-deconvolution
Python
•
MIT License
•4•24•2•0•Updated Jan 23, 2026Jan 23, 2026
Spoti-find
Public
Python
•
GNU General Public License v2.0
•0•1•5•0•Updated Jan 14, 2026Jan 14, 2026
sennet-demo
Public
Demo notebooks for using SenNet data
Jupyter Notebook
•
MIT License
•1•4•0•0•Updated Jan 13, 2026Jan 13, 2026
zarrdataset
Public
A dataset for loading zarr files to be used in machine learning training pipelines
imaging-solutions
imaging-solutions
Python
•
MIT License
•4•35•2•1•Updated Jan 5, 2026Jan 5, 2026
HeartSeneDataAnalysis
Public
Jupyter Notebook
•
MIT License
•0•0•0•0•Updated Dec 22, 2025Dec 22, 2025
imaging-applications-documentation
Public
Creative Commons Attribution 4.0 International
•0•1•0•0•Updated Dec 11, 2025Dec 11, 2025
ezomero
Public
A module with convenience functions for writing Python code that interacts with OMERO.
python omero omero-server
python omero omero-server imaging-solutions omero-api
Python
•
GNU General Public License v2.0
•17•46•4•1•Updated Dec 4, 2025Dec 4, 2025
deeplearning-image-analysis-workshop
Public
Notebooks for the workshop Advanced Machine learning with Python
imaging-solutions
imaging-solutions
CSS
•
MIT License
•0•1•0•0•Updated Nov 21, 2025Nov 21, 2025
Galaxy_Tools_CBA
Public
This is the Python and config files for the CBA tools deployed in Galaxy
Python
•0•0•0•0•Updated Nov 21, 2025Nov 21, 2025
LIRICAL
Public
LIkelihood Ratio Interpretation of Clinical AbnormaLities
Java
•
Other
•13•39•9•2•Updated Nov 19, 2025Nov 19, 2025
bestpractices_workshop
Public
Best Practices in Python Workshop
Python
•
MIT License
•8•2•0•0•Updated Nov 12, 2025Nov 12, 2025
bioimaging-tasks-to-tools
Public
Quick reference for selecting the right open source tool for a bioimage analysis task.
CSS
•
Creative Commons Attribution 4.0 International
•0•2•4•0•Updated Oct 17, 2025Oct 17, 2025