Repositories list

• jds-ui-toolkit

  Public

  TheJacksonLaboratory/jds-ui-toolkit’s past year of commit activity
  The JAX UI Toolkit workspace is a development environment engineered to streamline the creation, testing and deployment of shared UI components and packages acr…

  TypeScript

  •

  MIT License

  •0•0•1•0•Updated Mar 18, 2026Mar 18, 2026

• NBL1

  Public
  This is a repository for code used in the manuscript titled "NBL1 Associates with Renal Phenotypes in Mice, but Partial Nbl1 Reduction Does Not Ameliorate Kidne…

  R

  •

  MIT License

  •0•0•0•0•Updated Mar 18, 2026Mar 18, 2026

• image-processing-ia

  Public
  Image Processing with Python

  HTML

  •

  Other

  •125•0•0•0•Updated Mar 17, 2026Mar 17, 2026

• voice-stream-io

  Public
  VoICE streaming service. Allows multiple input file formats to be streamed to POJOS in a very performant way.

  Java

  •

  Apache License 2.0

  •0•0•1•1•Updated Mar 13, 2026Mar 13, 2026

• geneweaver-api

  Public
  A system for the integration and analysis of heterogeneous functional genomics data.

  genomicsanalysisfunctional-genomics+ 1

  genomicsanalysisfunctional-genomicsgenomic-data-science

  Python

  •

  Apache License 2.0

  •0•6•0•1•Updated Mar 12, 2026Mar 12, 2026

• geneweaver-db

  Public
  The GeneWeaver database interaction code.

  sqlgenomicsfunctional-genomics+ 2

  sqlgenomicsfunctional-genomicsgenomic-data-sciencegeneweaver

  Python

  •

  Apache License 2.0

  •0•2•0•1•Updated Mar 10, 2026Mar 10, 2026

• jax-apml-lrs

  Public
  Nextflow

  •

  MIT License

  •0•0•0•0•Updated Mar 10, 2026Mar 10, 2026

• pdxnet-image-analysis-aacr2022

  Public
  Regional classification and other analysis of PDXNet H&E images for AACR 2022

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Mar 9, 2026Mar 9, 2026

• hpo-web

  Public
  a web application to search and navigate the Human Phenotype Ontology (HPO)

  groovyangularhpo+ 1

  groovyangularhpograils3

  HTML

  •

  Other

  •13•14•9•2•Updated Mar 4, 2026Mar 4, 2026

• ontology-service

  Public
  A generic ontology term microservice

  Java

  •2•9•5•0•Updated Mar 3, 2026Mar 3, 2026

• jax-omeroutils

  Public
  A module and scripts for working with OMERO

  omeroomero-importimaging-solutions

  omeroomero-importimaging-solutions

  Python

  •

  GNU General Public License v2.0

  •3•6•4•1•Updated Mar 2, 2026Mar 2, 2026

• Phenomiser

  Public
  Phenotype-based Diagnosis Tool for Rare Diseases

  Java

  •5•13•6•2•Updated Mar 2, 2026Mar 2, 2026

• jds-nf-workflows

  Public
  The Jackson Laboratory Data Science Nextflow based analysis workflows

  Nextflow

  •

  MIT License

  •11•25•0•0•Updated Feb 27, 2026Feb 27, 2026

• jds-nf-test

  Public
  Repository for hosting test data for cs-nf-pipelines

  MIT License

  •0•0•0•0•Updated Feb 27, 2026Feb 27, 2026

• geneweaver-legacy

  Public
  JavaScript

  •0•1•28•1•Updated Feb 23, 2026Feb 23, 2026

• ontology-annotation-network

  Public
  A rest-api to serve a neo4j database of supported ontology annotations.

  Java

  •

  Other

  •1•3•0•0•Updated Feb 11, 2026Feb 11, 2026

• umi-bulk-rna-simulator

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Feb 2, 2026Feb 2, 2026

• 2026-04-26-multiomics-course

  Public
  A course website for the Short Course on Methods for Multiomics Analysis, April 26-May in Bar Harbor

  HTML

  •

  Other

  •0•0•0•0•Updated Jan 30, 2026Jan 30, 2026

• STQ

  Public
  Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images

  spatial-transcriptomicsrna-velocityvisium+ 4

  spatial-transcriptomicsrna-velocityvisiumxenomehe-stained-wsixengsortspecies-deconvolution

  Python

  •

  MIT License

  •4•24•2•0•Updated Jan 23, 2026Jan 23, 2026

• Spoti-find

  Public
  Python

  •

  GNU General Public License v2.0

  •0•1•5•0•Updated Jan 14, 2026Jan 14, 2026

• sennet-demo

  Public
  Demo notebooks for using SenNet data

  Jupyter Notebook

  •

  MIT License

  •1•4•0•0•Updated Jan 13, 2026Jan 13, 2026

• zarrdataset

  Public
  A dataset for loading zarr files to be used in machine learning training pipelines

  imaging-solutions

  imaging-solutions

  Python

  •

  MIT License

  •4•35•2•1•Updated Jan 5, 2026Jan 5, 2026

• HeartSeneDataAnalysis

  Public
  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Dec 22, 2025Dec 22, 2025

• imaging-applications-documentation

  Public
  Creative Commons Attribution 4.0 International

  •0•1•0•0•Updated Dec 11, 2025Dec 11, 2025

• ezomero

  Public
  A module with convenience functions for writing Python code that interacts with OMERO.

  pythonomeroomero-server+ 2

  pythonomeroomero-serverimaging-solutionsomero-api

  Python

  •

  GNU General Public License v2.0

  •17•46•4•1•Updated Dec 4, 2025Dec 4, 2025

• deeplearning-image-analysis-workshop

  Public
  Notebooks for the workshop Advanced Machine learning with Python

  imaging-solutions

  imaging-solutions

  CSS

  •

  MIT License

  •0•1•0•0•Updated Nov 21, 2025Nov 21, 2025

• Galaxy_Tools_CBA

  Public
  This is the Python and config files for the CBA tools deployed in Galaxy

  Python

  •0•0•0•0•Updated Nov 21, 2025Nov 21, 2025

• LIRICAL

  Public
  LIkelihood Ratio Interpretation of Clinical AbnormaLities

  Java

  •

  Other

  •13•39•9•2•Updated Nov 19, 2025Nov 19, 2025

• bestpractices_workshop

  Public
  Best Practices in Python Workshop

  Python

  •

  MIT License

  •8•2•0•0•Updated Nov 12, 2025Nov 12, 2025

• bioimaging-tasks-to-tools

  Public
  Quick reference for selecting the right open source tool for a bioimage analysis task.

  CSS

  •

  Creative Commons Attribution 4.0 International

  •0•2•4•0•Updated Oct 17, 2025Oct 17, 2025