Repositories list

• bootcamp

  Public
  Biocore bootcamp

  HTML

  •

  MIT License

  •15•17•0•0•Updated Sep 29, 2025Sep 29, 2025

• debrowser-docs

  Public
  DEBrowser readthedocs

  2•0•0•0•Updated Jan 21, 2025Jan 21, 2025

• debrowser

  Public
  Differential Count Data Analysis Toolbox

  R

  •

  GNU General Public License v3.0

  •30•61•15•0•Updated Feb 5, 2024Feb 5, 2024

• dolphinnext

  Public
  A graphical user interface for distributed data processing of high throughput genomics

  bioinformaticsrna-seqpipeline+ 10nextflowdrag-and-droppipelineschip-seqatac-seqclustersworkflows+ 3

  PHP

  •2•8•36•0•Updated Sep 15, 2023Sep 15, 2023

• multiomic-singlecell-brainatlas-website

  Public
  JavaScript

  •1•0•0•0•Updated Jan 9, 2023Jan 9, 2023

• markdownapp

  Public
  OpenCPU Markdown App

  JavaScript

  •29•0•0•0•Updated Dec 14, 2022Dec 14, 2022

• initialrun-docker

  Public
  docker image for DolphinNext initial run

  Dockerfile

  •

  MIT License

  •1•0•0•0•Updated Nov 21, 2022Nov 21, 2022

• dprofiler

  Public
  R

  •

  Other

  •1•0•0•0•Updated Oct 13, 2022Oct 13, 2022

• dolphinnext-tutorial

  Public
  DolphinNext Tutorial documents

  MIT License

  •14•7•0•0•Updated Feb 17, 2022Feb 17, 2022

• ABRF_GBIRG_OntologyStudy

  Public
  HTML

  •2•0•0•0•Updated Dec 14, 2021Dec 14, 2021

• dprofiler-docs

  Public
  Dolphin Profiler

  2•0•0•0•Updated Nov 1, 2021Nov 1, 2021

• bootcamp_stats

  Public
  RStudio docker image for stats bootcamp

  Dockerfile

  •

  MIT License

  •2•0•0•0•Updated Aug 29, 2021Aug 29, 2021

• SignallingSingleCell

  Public
  R

  •8•0•0•0•Updated May 27, 2021May 27, 2021

• s3hashcheck

  Public
  Python

  •2•0•0•0•Updated May 7, 2021May 7, 2021

• tools

  Public
  Shared tools

  Perl

  •3•0•0•0•Updated Dec 27, 2020Dec 27, 2020

• StringTie_Module

  Public
  Nextflow

  •3•0•0•0•Updated Nov 12, 2020Nov 12, 2020

• debrowser-docker

  Public
  debrowser docker version

  Dockerfile

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated May 30, 2020May 30, 2020

• leafcutter

  Public
  leafcutter

  Dockerfile

  •1•0•0•0•Updated Jan 17, 2020Jan 17, 2020

• dolphinnext-umms-training

  Public
  DolphinNext UMMS training documents

  MIT License

  •1•0•0•0•Updated Nov 20, 2019Nov 20, 2019

• docker_ucsc

  Public
  Dockerfile

  •1•0•0•0•Updated Sep 25, 2019Sep 25, 2019

• docker_ucsc_db

  Public
  docker ucsc genome browser db

  Dockerfile

  •1•0•0•0•Updated Sep 25, 2019Sep 25, 2019

• atacseq

  Public
  Atac-Seq pipeline

  Nextflow

  •4•0•0•0•Updated Aug 22, 2019Aug 22, 2019

• chipseq

  Public
  Chip-Seq pipeline

  Nextflow

  •5•0•0•0•Updated Aug 22, 2019Aug 22, 2019

• rnaseq

  Public
  RNA-Seq pipeline

  Nextflow

  •6•0•0•0•Updated Aug 21, 2019Aug 21, 2019

• singularitysc

  Public
  1•0•0•0•Updated Jun 13, 2019Jun 13, 2019

• initialrun

  Public
  singularity image for dolphinNext initial run

  0•0•0•0•Updated Jun 12, 2019Jun 12, 2019

• bioinfoweb

  Public
  UMMS Bioinformatics Core Web pages

  HTML

  •0•0•0•0•Updated May 23, 2019May 23, 2019

• singularity-cellranger

  Public
  3•0•0•0•Updated May 13, 2019May 13, 2019

• singularity

  Public
  Executables

  MIT License

  •1•0•0•0•Updated Dec 7, 2018Dec 7, 2018

• RNASeqTutorial

  Public
  A tutorial to perform RNA-Seq data processing and analysis

  R

  •6•6•0•0•Updated Nov 1, 2018Nov 1, 2018