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@VirtualFlyBrain Virtual Fly Brain

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    111 repositories

    • VFB2

      Public
      Virtual Fly Brain Documentation Site
      Python
      •
      MIT License
      •5•8•167•0•Updated Feb 7, 2026Feb 7, 2026

    • VFBquery

      Public
      A high-performance Python library providing optimized programmatic access to the VirtualFlyBrain knowledge graph, with 54,000x faster queries through intelligen…
      Python
      •
      Apache License 2.0
      •0•0•4•0•Updated Feb 7, 2026Feb 7, 2026

    • VFB3-MCP

      Public
      Explore Virtual Fly Brain data directly through your favourite LLM with the new VFB Model Context Protocol (MCP) tool
      mcpdrosophila-melanogastermcp-server
      TypeScript
      •
      MIT License
      •1•0•0•0•Updated Feb 6, 2026Feb 6, 2026

    • VFB_connect_api

      Public
      API wrapping VFB_connect library
      Python
      •0•0•1•14•Updated Feb 5, 2026Feb 5, 2026

    • vfb_rest

      Public
      HTML
      •0•0•1•49•Updated Feb 5, 2026Feb 5, 2026

    • VFB_connect

      Public
      A library for querying VFB servers (neo4j, owlery, solr)
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•5•29•51•Updated Feb 5, 2026Feb 5, 2026

    • geppetto-vfb

      Public
      VFB (v2) application
      JavaScript
      •
      Other
      •2•6•66•39•Updated Feb 4, 2026Feb 4, 2026

    • vfb-driver-ontology

      Public
      Makefile
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Feb 2, 2026Feb 2, 2026

    • owlery-cache-reload

      Public
      Preload all VFB owlery queries
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 31, 2026Jan 31, 2026

    • vfb-pipeline-dumps

      Public
      Pipeline that creates dumps from the triplestore for consumption by the downstream services
      Python
      •
      Apache License 2.0
      •0•0•13•2•Updated Jan 31, 2026Jan 31, 2026

    • neuPrint

      Public
      tools for importing connectome data into neo4j
      Java
      •
      BSD 3-Clause "New" or "Revised" License
      •9•0•0•41•Updated Jan 29, 2026Jan 29, 2026

    • virtual-fly-brain

      Public
      VFB v3 development
      JavaScript
      •1•0•2•0•Updated Jan 26, 2026Jan 26, 2026

    • VFB_reporting

      Public
      Scripts for reporting on the state of VFB content and pipeline
      Jupyter Notebook
      •0•0•10•11•Updated Jan 26, 2026Jan 26, 2026

    • VFB_reporting_results

      Public
      Repository containing the results of various data change and consistency checking.
      Python
      •0•1•2•0•Updated Jan 26, 2026Jan 26, 2026

    • VFB_connectomics_import

      Public
      A project to produce RDF/OWL representations of connectomics data for import to the VFB integration layer triple store.
      Python
      •0•0•4•16•Updated Jan 23, 2026Jan 23, 2026

    • NBLAST_matrix_proc

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•5•Updated Jan 20, 2026Jan 20, 2026

    • vfb-neurotransmitter-predictions

      Public
      Neurotransmitter predictions and confidence values for VFB individuals. Data taken from neuprint.
      Makefile
      •0•0•0•0•Updated Jan 19, 2026Jan 19, 2026

    • jenkins

      Public
      jenkins with extra dependancies
      Dockerfile
      •0•0•0•0•Updated Jan 16, 2026Jan 16, 2026

    • curation

      Public
      A repository of records specifying curation into the VFB Knowledge Base
      Python
      •0•0•22•9•Updated Jan 14, 2026Jan 14, 2026

    • DrosAdultBRAINdomains

      Public
      Drosophila Adult Brain Domains
      GNU General Public License v3.0
      •8•14•4•0•Updated Jan 13, 2026Jan 13, 2026

    • vfb-pipeline-integration-api

      Public
      Python
      •0•0•0•20•Updated Jan 13, 2026Jan 13, 2026

    • vfb-data-ingest-api

      Public
      This repository contains the REST API code for the Data Ingest API
      Python
      •
      Other
      •0•0•11•29•Updated Jan 11, 2026Jan 11, 2026

    • schema

      Public
      A repository for amalgamating documentation of VFB schema and tickets/discussion about it
      Python
      •
      GNU General Public License v3.0
      •0•0•4•5•Updated Jan 11, 2026Jan 11, 2026

    • VFB_neo4j

      Public
      A python package for writing schema-compliant content to VFB neo4J DBs
      neo4jowlflybase
      Python
      •
      Apache License 2.0
      •1•0•66•21•Updated Jan 10, 2026Jan 10, 2026

    • VFB_json_schema

      Public
      VFB json schema spec + code for rolling queries producing VFB json schema + related integration tests
      Python
      •
      Apache License 2.0
      •0•0•31•6•Updated Jan 10, 2026Jan 10, 2026

    • owl_cache

      Public
      a pre-caching and refresh sever to sit in front of owlery to speed up slow queries
      Dockerfile
      •
      MIT License
      •0•0•0•0•Updated Dec 22, 2025Dec 22, 2025

    • training

      Public
      Repository for training notebooks
      Jupyter Notebook
      •
      GNU General Public License v2.0
      •3•5•0•28•Updated Dec 14, 2025Dec 14, 2025

    • vfb-scRNAseq-gene-annotations

      Public
      Makefile
      •0•0•0•0•Updated Dec 12, 2025Dec 12, 2025

    • vfb-EPseq-ontology

      Public
      Makefile
      •0•0•0•0•Updated Dec 12, 2025Dec 12, 2025

    • vfb-scRNAseq-ontology

      Public
      An ontology of Drosophila melanogaster scRNAseq data pulled from FlyBase.
      Makefile
      •0•0•1•0•Updated Dec 12, 2025Dec 12, 2025