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    14 repositories

    • .github

      Public
      ✨special ✨ repository to add a README.md to GitHub profile.
      0•0•0•0•Updated Jan 30, 2025Jan 30, 2025

    • CellBender

      Public
      CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •77•0•0•0•Updated Sep 27, 2024Sep 27, 2024

    • terraPipelines

      Public
      WDL
      •0•0•0•0•Updated Jun 21, 2024Jun 21, 2024

    • AtlasStats

      Public
      Tool to assess data availability in WLG scAtlas.
      Jupyter Notebook
      •0•0•0•0•Updated Mar 26, 2024Mar 26, 2024

    • TerraPipelines_BulkRNAseq

      Public
      Bulk RNAseq pre-processing pipeline
      Jupyter Notebook
      •0•1•0•0•Updated Feb 22, 2024Feb 22, 2024

    • Atlas-portal

      Public
      The data portal supporting the submission, exploration, and management of projects and datasets to cellxgene.
      TypeScript
      •
      MIT License
      •14•0•0•0•Updated Nov 28, 2023Nov 28, 2023

    • atlas-tools

      Public
      CZ CELLxGENE Discover Census
      Jupyter Notebook
      •
      MIT License
      •29•0•0•0•Updated Nov 20, 2023Nov 20, 2023

    • genepy

      Public
      Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python
      Python
      •
      Apache License 2.0
      •8•0•0•1•Updated Oct 26, 2023Oct 26, 2023

    • wlgget

      Public
      🧬 gget enables efficient querying of genomic reference databases. part of the metaAtlas
      atlas
      Python
      •
      BSD 2-Clause "Simplified" License
      •81•0•0•0•Updated Aug 16, 2023Aug 16, 2023

    • single-cell-curation

      Public
      Code and documentation for the curation of cellxgene datasets
      Python
      •
      MIT License
      •28•0•0•0•Updated Jul 11, 2023Jul 11, 2023

    • dalmatian

      Public
      dalmatian is a collection of high-level companion functions for Firecloud and FISS.
      Python
      •13•0•0•0•Updated Mar 31, 2023Mar 31, 2023

    • python_action

      Public
      Repo that contains the different steps to test and creating github actions for python code. The aim is to be a reference to the python developers of WhiteLabGenomics.
      workflowcode-practicegithub-actions
      Shell
      •0•0•0•0•Updated Mar 27, 2023Mar 27, 2023

    • DemoGeneExpression

      Public archive
      A proof of concept for simpler UIs in expert mode
      Julia
      •0•0•0•0•Updated Jan 6, 2022Jan 6, 2022

    • MolGAN

      Public
      Tensorflow implementation of MolGAN: An implicit generative model for small molecular graphs
      structural-biologygenerative-model
      Python
      •
      MIT License
      •87•0•0•0•Updated Aug 4, 2021Aug 4, 2021