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    21 repositories

    • neoguider

      Public
      NeoGuider, neoepitope detection using advanced feature engineering
      feature-engineeringcancer-researchgeneralized-linear-models
      feature-engineeringcancer-researchgeneralized-linear-modelsneoepitopesscikit-learn-apinon-parametric-density-estimationsnakemake-pipelineneoantigen-predictiontumor-antigen
      Python
      •
      GNU Affero General Public License v3.0
      •1•4•0•0•Updated Feb 26, 2026Feb 26, 2026

    • hECA-v2.0

      Public
      A code repository for hECA v2.0.
      Jupyter Notebook
      •1•1•0•0•Updated Sep 23, 2025Sep 23, 2025

    • NeoRanking

      Public
      Priorization of neoantigens by machine learning
      Python
      •2•0•0•0•Updated May 26, 2025May 26, 2025

    • SCeQTL

      Public
      single-cell-rnaseq-eqtl
      single-cell-rnaseq-eqtl
      R
      •8•18•6•0•Updated May 15, 2025May 15, 2025

    • uniHEART

      Public
      the repository of uniHEART
      Jupyter Notebook
      •
      MIT License
      •1•1•0•0•Updated Aug 2, 2023Aug 2, 2023

    • NeoHunter

      Public
      Emacs Lisp
      •2•0•0•0•Updated May 10, 2023May 10, 2023

    • hECA_protocol_case

      Public
      protocol cases
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Jun 23, 2022Jun 23, 2022

    • hECA_GeneSymbolUniform_Rtoolkit

      Public
      The gene symbol uniform toolkit for hECA in R
      R
      •
      MIT License
      •0•0•0•0•Updated May 10, 2022May 10, 2022

    • somde

      Public
      Algorithm for finding gene spatial pattern based on Gaussian process accelerated by SOM
      Jupyter Notebook
      •
      MIT License
      •5•4•0•0•Updated May 10, 2022May 10, 2022

    • hECA

      Public
      Jupyter Notebook
      •2•7•1•0•Updated May 9, 2022May 9, 2022

    • ECAUGT

      Public
      a package designed for customized in data cell sorting under the human Ensemble Cell Atalas (hECA).
      Python
      •0•0•0•0•Updated Jan 28, 2022Jan 28, 2022

    • HGC

      Public
      fast hierarchical clustering for large-scale single-cell data
      R
      •5•10•1•0•Updated Jul 11, 2021Jul 11, 2021

    • scMetric

      Public
      single cell data metric learning
      R
      •1•6•0•0•Updated Jul 19, 2020Jul 19, 2020

    • Xuegonglab.github.io

      Public
      HTML
      •0•0•0•0•Updated Dec 3, 2019Dec 3, 2019

    • DenseFly4scRNAseq

      Public
      Jupyter Notebook
      •1•1•0•0•Updated Jul 30, 2019Jul 30, 2019

    • scRecover

      Public
      Modest imputation for single-cell RNA-seq data. Homepage: https://miaozhun.github.io/scRecover. Bioconductor page: https://bioconductor.org/packages/scRecover.
      R
      •5•1•0•0•Updated May 5, 2019May 5, 2019

    • HCA-reproducibility

      Public
      A case study on the detailed reproducibility of a human cell atlas project
      Jupyter Notebook
      •4•3•0•0•Updated Oct 30, 2018Oct 30, 2018

    • DEsingle

      Public
      Homepage: https://miaozhun.github.io/DEsingle. Bioconductor page: https://bioconductor.org/packages/DEsingle.
      R
      •7•0•0•0•Updated Oct 26, 2018Oct 26, 2018

    • SIP

      Public
      SIP, a Single-cell Interchangeable Pipeline, still under construction
      Python
      •
      GNU General Public License v3.0
      •2•1•0•0•Updated Oct 22, 2018Oct 22, 2018

    • D2R_codes

      Public
      C++
      •1•0•0•0•Updated Oct 18, 2018Oct 18, 2018

    • SCRL

      Public
      4•0•0•0•Updated May 6, 2017May 6, 2017