YangLab@HKUST

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44 repositories

CellART
Public
Python
•
MIT License
•0•4•0•0•Updated Jan 8, 2026Jan 8, 2026
MATH-4432-Statistical-Machine-Learning
Public
Tutorials for MATH 4432 Statistical Machine Learning, 2025 Fall
HTML
•4•20•0•0•Updated Nov 26, 2025Nov 26, 2025
MacSGP
Public
MacSGP: Mapping Cell-Type-Specific Spatial Gene Programs Uncovers Tissue Architecture and Microenvironment Organization
deep-learning spatial-transcriptomics gene-program
Python
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MIT License
•0•3•0•0•Updated Nov 24, 2025Nov 24, 2025
MCube
Public
A unified framework for identification of cell-type-specific spatially variable genes in spatial transcriptomic studies
spatial-transcriptomics spatially-variable-genes penalized-quasi-likelihood variance-component-testing
R
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GNU General Public License v3.0
•0•8•0•0•Updated Nov 20, 2025Nov 20, 2025
Harmonics
Public
Hierarchical distribution matching enables comprehensive characterization of common and condition-specific cell niches in spatial omics data
Python
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MIT License
•0•2•0•0•Updated Sep 23, 2025Sep 23, 2025
UGPhysics
Public
Official Repository of UGPhysics Benchmark [ICML 2025]
Python
•5•51•1•0•Updated Aug 31, 2025Aug 31, 2025
NBAvatar
Public
Python
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Other
•0•1•0•0•Updated Jun 30, 2025Jun 30, 2025
FLAG
Public
Flexible and Accurate Methods for Estimation and Inference of Gaussian Graphical Models with Applications
r gaussian-graphical-models precision-matrix empirical-bayes random-effects-model statistical-inference-for-data-science joint-estimation low-rank-update
Jupyter Notebook
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Other
•0•5•0•0•Updated Jun 22, 2025Jun 22, 2025
UCS
Public
Code for "UCS: a unified approach to cell segmentation for subcellular spatial transcriptomics"
Jupyter Notebook
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MIT License
•1•9•3•0•Updated May 22, 2025May 22, 2025
UGMathBench
Public
Official Repo of UGMathBench: A Diverse and Dynamic Benchmark for Undergraduate-Level Mathematical Reasoning with Large Language Models [ICLR 2025]
Python
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GNU General Public License v3.0
•1•7•0•0•Updated May 20, 2025May 20, 2025
STIMP
Public
Jupyter Notebook
•2•16•2•0•Updated May 19, 2025May 19, 2025
STD-Hunter
Public
Jupyter Notebook
•0•0•0•0•Updated May 15, 2025May 15, 2025
mfair
Public
mfair: Matrix Factorization with Auxiliary Information in R
r matrix-factorization expectation-maximization-algorithm variational-inference matrix-completion gradient-boosting low-rank empirical-bayes
R
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Other
•0•9•0•0•Updated Apr 21, 2025Apr 21, 2025
MR-APSS
Public
Mendelian Randomization accounting for Pleiotropy and Sample Structure using genome-wide summary statistics
R
•10•43•5•1•Updated Apr 8, 2025Apr 8, 2025
XMAP
Public
HTML
•1•10•2•0•Updated Dec 19, 2024Dec 19, 2024
MRbenchmarking
Public
R
•0•8•0•0•Updated Oct 16, 2024Oct 16, 2024
SRT_alignment_and_integration
Public
Measurement and comparison of several slices aligning methods and data integrating mathods for spatial transcriptomics data using several ST datasets.
Python
•0•6•0•0•Updated Sep 15, 2024Sep 15, 2024
XPASS
Public
Cross-population analysis using GWAS summary statistics
R
•6•18•4•1•Updated Jun 25, 2024Jun 25, 2024
SpatialScope
Public
A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models
Python
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GNU General Public License v3.0
•9•77•14•0•Updated May 24, 2024May 24, 2024
STitch3D
Public
Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices
deep-learning 3d-reconstruction spatial-transcriptomics
Python
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MIT License
•5•69•17•0•Updated Nov 20, 2023Nov 20, 2023
PALM
Public
Python
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MIT License
•0•6•0•0•Updated Nov 15, 2023Nov 15, 2023
3DVesselSegNet
Public
hybrid representation learning approach for fully automatic and template-free vessel centerline extraction
Jupyter Notebook
•0•12•0•0•Updated Jul 17, 2023Jul 17, 2023
Portal
Public
Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets
deep-learning data-integration single-cell-analysis
Python
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MIT License
•6•32•4•0•Updated Jul 13, 2023Jul 13, 2023
SpatialScope-Beta
Public
Python
•0•0•0•0•Updated Feb 7, 2023Feb 7, 2023
LOG-TRAM
Public
Python
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MIT License
•1•10•1•0•Updated Jul 8, 2022Jul 8, 2022
XPXP
Public
Jupyter Notebook
•0•0•0•0•Updated May 24, 2022May 24, 2022
MRAPSS_RealDataAnalysis_reproduce
Public
R code for reproduce real data analysis in MRAPSS paper.
mr inside pleiotropy mendelian-randomization selection-bias correlated-pleiotropy
HTML
•0•2•0•0•Updated May 6, 2022May 6, 2022
DGLSB
Public
Deep Generative Learning via Schrödinger Bridge
Python
•3•25•0•0•Updated Nov 1, 2021Nov 1, 2021
GPU-LMM
Public
C++
•0•0•0•0•Updated Mar 3, 2021Mar 3, 2021
VCM
Public
R package VCM contains three approaches for solving variance components model: PX-EM algorithm, MM algorithm and Method of Moments
R
•4•1•0•0•Updated Nov 1, 2020Nov 1, 2020