Greater Paris University Hospitals (AP-HP)

All

49 repositories

HELIX
Public
HELIX (Health and Exploration Lab for Innovative eXperiments) is an AP‑HP open‑source platform that bundles data lab and clinical research tools into a secure, …
data-science helm lab
data-science helm lab data-visualization data-analysis
Python
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Apache License 2.0
•0•3•3•0•Updated Mar 11, 2026Mar 11, 2026
redcap-helmchart
Public
APHP REDCap cloud-native and vendor-agnostic HelmChart
cloud health redcap
cloud health redcap helmchart ecrf aphp
Go Template
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Apache License 2.0
•6•6•1•1•Updated Mar 10, 2026Mar 10, 2026
jupyter-eds-notebooks
Public
jupyter-eds-notebooks provides Docker images with preconfigured Jupyter environments for clinical and health data analysis, tailored for AP‑HP Datalabs and the …
data-science lab data-visualization
data-science lab data-visualization healthcare data-analysis
Shell
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Apache License 2.0
•1•0•3•1•Updated Mar 10, 2026Mar 10, 2026
edsnlp
Public
Modular, fast NLP framework, compatible with Pytorch and spaCy, offering tailored support for French clinical notes.
nlp fast text-mining
nlp fast text-mining deep-learning pytorch spacy medical french multi-task rule-based
Python
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BSD 3-Clause "New" or "Revised" License
•40•156•45•21•Updated Mar 5, 2026Mar 5, 2026
Cohort360-FrontEnd
Public
A web application to find patients, build cohorts and visualize health records
query data-visualization medical
query data-visualization medical fhir visualize-data medtech clinical-data cohorts omop cohort-analysis
TypeScript
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Apache License 2.0
•9•55•3•12•Updated Mar 3, 2026Mar 3, 2026
ci-workflows
Public
This repository hosts GitHub Workflows examples to be used in APHP Projects
Apache License 2.0
•2•0•1•0•Updated Mar 3, 2026Mar 3, 2026
Cohort360-QueryExecutor
Public
Scala
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Mozilla Public License 2.0
•0•2•0•5•Updated Mar 1, 2026Mar 1, 2026
mkdocs-eds
Public
Various plugins and extensions to customize mkdocs
CSS
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Apache License 2.0
•0•2•2•0•Updated Mar 1, 2026Mar 1, 2026
foldedtensor
Public
PyTorch extension for handling deeply nested sequences of variable length
Python
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BSD 3-Clause "New" or "Revised" License
•0•13•1•2•Updated Feb 25, 2026Feb 25, 2026
redcap-containers
Public
A set of container images used to run APHP REDCap Helmchart
cloud container health
cloud container health redcap ecrf
Dockerfile
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Apache License 2.0
•3•1•0•0•Updated Feb 23, 2026Feb 23, 2026
Cohort360-Back-end
Public
Part of the Cohort360 Project @ https://github.com/aphp/Cohort360, backend of the Cohort360 web app @ https://github.com/aphp/Cohort360-FrontEnd and the Adminis…
api administration portal
api administration portal cohort
Python
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Apache License 2.0
•1•7•0•6•Updated Feb 11, 2026Feb 11, 2026
IG-fhir-dm
Public
FHIR Implementation Guide for Data Management
data-management hl7-fhir
data-management hl7-fhir
Python
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Other
•1•7•1•0•Updated Feb 5, 2026Feb 5, 2026
eds-pseudo
Public
EDS-Pseudo is a hybrid model for detecting personally identifying entities in clinical reports
nlp pseudonymisation edsnlp
nlp pseudonymisation edsnlp
Python
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Other
•8•67•3•0•Updated Feb 5, 2026Feb 5, 2026
hl7.fhir.fr.core
Public
FHIR FrCore Implementation Guide
GLSL
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Other
•6•0•0•0•Updated Jan 30, 2026Jan 30, 2026
Entretiens-Cohort360
Public
Shell
•15•0•0•5•Updated Jan 23, 2026Jan 23, 2026
confit
Public
Confit is a complete and easy-to-use configuration framework aimed at improving the reproducibility of experiments by relying on the Python type annotations, mi…
python cli registry
python cli registry validation interpolation configuration
Python
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BSD 3-Clause "New" or "Revised" License
•0•11•2•1•Updated Jan 21, 2026Jan 21, 2026
fhir-mapbuilder
Public
FHIR MapBuilder is a Visual Studio Code extension designed to facilitate the edition of FHIR StructureMap resources using FHIR Mapping Language (FML).
fhir fml
fhir fml
TypeScript
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Other
•2•5•2•0•Updated Dec 10, 2025Dec 10, 2025
nf-s97
Public
normes homologuées par AFNOR : NF S97-53x Novembre 2010 Informatique de santé - Messages concernant la transfusion sanguine - Message de traçabilité de produits…
Java
•0•0•0•0•Updated Dec 10, 2025Dec 10, 2025
ig-template-aphp
Public
HTML
•1•0•0•0•Updated Dec 4, 2025Dec 4, 2025
kerberos-kinit
Public
This is a simple docker image continuously refreshing a krb5 ticket cache. It is intended to be used in K8S as a side-car runing in a pod needing such authentic…
Shell
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Apache License 2.0
•0•0•0•0•Updated Dec 2, 2025Dec 2, 2025
Cohort360-AdministrationPortal
Public
TypeScript
•0•0•0•0•Updated Nov 27, 2025Nov 27, 2025
formbuilder
Public
The AP-HP FormBuilder allows building (creating and editing) forms in FHIR - R4 format (Questionnaire). It is based on the NLM FormBuilder, an open-source proje…
fhir
fhir
TypeScript
•
Other
•0•1•0•0•Updated Oct 24, 2025Oct 24, 2025
demo-fhir-dm
Public
Roff
•0•0•0•0•Updated Oct 21, 2025Oct 21, 2025
prism-lang-fsh
Public
A Prism.js language definition plugin for FHIR Shorthand
JavaScript
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MIT License
•1•0•0•0•Updated Sep 22, 2025Sep 22, 2025
prism-lang-fml
Public
A Prism.js language definition plugin for FHIR Mapping Language (FML)
JavaScript
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MIT License
•1•0•0•0•Updated Sep 22, 2025Sep 22, 2025
IG-fhir-formbuilder
Public
The FHIR Implementation Guide of the FormBuilder is available:
fhir-questionnaire fhir-implementation-guide
fhir-questionnaire fhir-implementation-guide
GLSL
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Other
•0•3•0•0•Updated Sep 16, 2025Sep 16, 2025
spark-solr
Public
Tools for reading data from Solr as a Spark RDD and indexing objects from Spark into Solr using SolrJ.
Scala
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Apache License 2.0
•251•0•0•1•Updated Jul 29, 2025Jul 29, 2025
Cohort360
Public
HTML
•0•2•0•0•Updated Jul 24, 2025Jul 24, 2025
rgho
Public
:globe_with_meridians:Access WHO Global Health Observatory Data From R
R
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GNU General Public License v3.0
•0•5•0•0•Updated Jun 16, 2025Jun 16, 2025
heemod
Public
Markov Models for Health Economic Evaluations
R
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GNU General Public License v3.0
•4•17•4•1•Updated Jun 16, 2025Jun 16, 2025