Repositories list

• MARSS

  Public
  Multivariate Autoregressive State-Space Modeling with R

  cranstatisticstime-series+ 3

  cranstatisticstime-seriesr-packagemultivariate-timeseriesstate-space-models

  R

  •

  GNU General Public License v3.0

  •28•54•34•0•Updated Sep 9, 2025Sep 9, 2025

• atsa

  Public
  Applied Time Series Analysis - course website repository.

  statisticstime-seriesecological-modelling

  statisticstime-seriesecological-modelling

  HTML

  •

  Other

  •9•19•10•1•Updated Jun 3, 2025Jun 3, 2025

• fish550-2025

  Public
  GitHub Repo for FISH 550 2025

  HTML

  •0•2•0•0•Updated May 31, 2025May 31, 2025

• atsalibrary

  Public
  Data, scripts and packages for ATSA course and book. Students should install this before running examples in the lab book.

  HTML

  •5•3•0•0•Updated Apr 26, 2025Apr 26, 2025

• mvdlm

  Public
  Multivariate dynamic linear models using Bayesian methods in Stan

  time-seriesbayesianstan+ 2

  time-seriesbayesianstanr-packagedlm

  C++

  •1•1•0•0•Updated Apr 22, 2025Apr 22, 2025

• fish550-2023

  Public template
  GitHub Repo for FISH 550 2023

  HTML

  •1•3•1•0•Updated Mar 22, 2025Mar 22, 2025

• atsa2023

  Public
  Archived version of the 2023 website

  HTML

  •

  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Jan 15, 2025Jan 15, 2025

• atsar

  Public
  Applied time series analysis in R with Stan. Allows fast Bayesian fitting of multivariate time-series models.

  time-seriesbayesianstan+ 1

  time-seriesbayesianstanr-package

  C++

  •16•48•2•0•Updated Jun 11, 2024Jun 11, 2024

• .github

  Public
  0•0•0•0•Updated Dec 1, 2023Dec 1, 2023

• atsa-es.r-universe.dev

  Public
  CRAN-like repository for the atsa-es packages. Binaries are available for Windows and MacOS

  0•0•0•0•Updated Nov 1, 2023Nov 1, 2023

• test-3

  Public
  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Oct 19, 2023Oct 19, 2023

• MAR1

  Public
  MAR1 Estimation

  time-seriesr-packagemultivariate-timeseries

  time-seriesr-packagemultivariate-timeseries

  R

  •0•1•1•0•Updated Jun 7, 2023Jun 7, 2023

• marssTMB

  Public
  Companion package for MARSS that allows you to use TMB to fit MARSS models

  time-seriesr-packagetmb+ 3

  time-seriesr-packagetmbmultivariate-timeseriesstate-space-modelmarss

  HTML

  •0•1•3•0•Updated May 23, 2023May 23, 2023

• pdfsizeopt-readme

  Public
  PDF file size optimizer

  Python

  •

  GNU General Public License v2.0

  •77•0•0•0•Updated May 17, 2023May 17, 2023

• MARSS-User-Guide

  Public
  The MARSS User Guide. https://cran.r-project.org/package=MARSS

  TeX

  •

  Creative Commons Zero v1.0 Universal

  •1•0•1•0•Updated May 16, 2023May 16, 2023

• fish550-devcontainer

  Public
  A devcontainer for FISH 550

  Jupyter Notebook

  •

  MIT License

  •0•1•1•0•Updated Mar 18, 2023Mar 18, 2023

• devcontainers-rstudio

  Public template
  Zero-setup R workshops with GitHub Codespaces

  Jupyter Notebook

  •

  MIT License

  •114•0•0•0•Updated Mar 18, 2023Mar 18, 2023

• atsa-es.github.io

  Public
  Website repository for Applied Time-Series Analysis for Fisheries and Environmental Data

  CSS

  •1•3•1•0•Updated Nov 29, 2022Nov 29, 2022

• binder-environment

  Public
  A binder environment for ATSA material. Make sure to read the wiki (tab to left) to read about my pain points.

  R

  •1•0•0•0•Updated Oct 19, 2022Oct 19, 2022

• varlasso

  Public
  Repo for fitting Bayesian VAR models with shrinkage on coefficient estimates

  time-seriesbayesianr-package+ 1

  time-seriesbayesianr-packagemultivariate-timeseries

  C++

  •3•2•0•0•Updated Sep 29, 2022Sep 29, 2022

• MARSS-pkgdown

  Public
  Multivariate Autoregressive State-Space Modeling with R

  R

  •

  Other

  •28•0•0•0•Updated May 26, 2022May 26, 2022

• MARSS2

  Public
  Multivariate Autoregressive State-Space Modeling with R

  R

  •

  Other

  •0•0•0•0•Updated Dec 15, 2021Dec 15, 2021

• atsa-labs

  Public
  Labs developed for Applied Fisheries Time-series Analysis course. The link for the text is https://atsa-es.github.io/atsa-labs/

  HTML

  •

  Other

  •18•22•4•0•Updated Dec 7, 2021Dec 7, 2021

• tvvarss

  Public
  Time varying vector autoregressive state space modeling of community interactions in a Bayesian framework

  time-seriesstate-spacebayesian+ 2

  time-seriesstate-spacebayesianr-packagemultivariate-timeseries

  C++

  •6•12•2•0•Updated Oct 4, 2021Oct 4, 2021

• org-level-todo

  Public
  Just for keeping track of issues at the org level

  0•0•4•0•Updated Sep 24, 2021Sep 24, 2021

• safs-timeseries

  Public
  Repository for miscellaneous code and data used in FISH 550 (Applied Time Series Analysis) at University of Washington

  R

  •3•9•0•0•Updated Sep 24, 2021Sep 24, 2021

• atsa2021

  Public
  Applied Time Series Analysis - 2021 course website repository.

  HTML

  •

  Other

  •1•1•1•0•Updated May 7, 2021May 7, 2021

• atsa2019

  Public
  Applied Time Series Analysis - 2019 course website repository.

  HTML

  •0•0•0•0•Updated Dec 18, 2020Dec 18, 2020

• atsa2017

  Public
  Fish 507 Applied Time Series Analysis 2017

  HTML

  •2•3•0•0•Updated May 9, 2019May 9, 2019

• MARSS-wiki

  Public
  TeX

  •0•0•0•0•Updated Oct 2, 2018Oct 2, 2018