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@bartongroup Geoff Barton's Computational Biology Group

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    90 repositories

    • PT_bacterial_assembly_interogation

      Public
      PT_bacterial_assembly_interogation
      Shell
      •
      MIT License
      •0•0•0•0•Updated Mar 20, 2026Mar 20, 2026

    • MG_Cdk46

      Public
      Mechanisms of action of small molecule inhibitors against cyclin dependent kinases 4 and 6 (CDK4/6) (Ly)
      R
      •0•0•0•0•Updated Mar 20, 2026Mar 20, 2026

    • PT_fertility_genomics

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 16, 2026Mar 16, 2026

    • PIPs

      Public
      PIPs webapp migration and containerization
      Java
      •0•0•0•0•Updated Mar 12, 2026Mar 12, 2026

    • MG_PhosphoMEK2

      Public
      Re-analysis of phosphorylation data, including total proteome (Storey)
      R
      •0•0•0•0•Updated Mar 3, 2026Mar 3, 2026

    • dexdash

      Public
      Interactive explorer for differential expression analysis centred on the volcano plot. Features fast functional enrichment.
      R
      •
      Other
      •0•2•0•0•Updated Feb 19, 2026Feb 19, 2026

    • PT_kraken2_16s_classification

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Feb 16, 2026Feb 16, 2026

    • PT_qiime_runner_v1

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Feb 6, 2026Feb 6, 2026

    • slivka-bio-docker

      Public
      Docker Compose configuration for slivka-bio
      Dockerfile
      •
      Apache License 2.0
      •1•3•0•0•Updated Jan 28, 2026Jan 28, 2026

    • fenr

      Public
      Fast functional enrichment.
      R
      •
      Other
      •0•0•0•0•Updated Jan 14, 2026Jan 14, 2026

    • JCA_NSW_comQXPA_rapP

      Public
      comQXPA and rapP genomic analysis
      Python
      •0•0•0•0•Updated Jan 14, 2026Jan 14, 2026

    • DRSASP-Kinomer

      Public
      HTML
      •0•1•0•0•Updated Nov 12, 2025Nov 12, 2025

    • ProteoFAV

      Public
      Open-source framework for simple and fast integration of protein structure data with sequence annotations and genetic variation
      pythonbioinformaticsstructural-biology
      pythonbioinformaticsstructural-biologypdbannotationspandasvariantsdata-analysisfeaturesmmcif
      Python
      •
      MIT License
      •0•4•13•0•Updated Nov 12, 2025Nov 12, 2025

    • slivka-python-client

      Public
      Python
      •
      Apache License 2.0
      •0•3•3•0•Updated Nov 7, 2025Nov 7, 2025

    • MG_BSubComp

      Public
      Transcriptomic changes in ΔcomA and ΔrapA mutants in Bacillus subtilis (Stanley-Wall)
      R
      •0•0•0•0•Updated Oct 27, 2025Oct 27, 2025

    • Colabfold_batch_installer

      Public
      Automated colabfold installation for UoD HPC Cluster
      Shell
      •0•1•1•0•Updated Oct 7, 2025Oct 7, 2025

    • SACK1G-analysis

      Public
      This is a GitHub Repository containing the data and code used for an structural analysis of FAM83G and FAM83G-CK1A 3D models
      Jupyter Notebook
      •0•1•0•0•Updated Sep 25, 2025Sep 25, 2025

    • AlmostSignificant

      Public
      A server for maintaining high-throughput sequencing QC data
      Python
      •
      MIT License
      •0•13•0•0•Updated Aug 5, 2025Aug 5, 2025

    • slivka-bio-installer

      Public
      Python
      •
      Apache License 2.0
      •1•0•0•0•Updated Jul 19, 2025Jul 19, 2025

    • LIGYSIS-web

      Public
      Roff
      •
      MIT License
      •1•8•0•1•Updated Jun 24, 2025Jun 24, 2025

    • slivka-bio

      Public
      Bioinformatics command line tools wrapped as slivka services with customisations for access from Jalview
      Python
      •
      Apache License 2.0
      •1•4•9•0•Updated Apr 29, 2025Apr 29, 2025

    • LIGYSIS-custom

      Public
      Roff
      •
      MIT License
      •0•1•0•0•Updated Apr 29, 2025Apr 29, 2025

    • slivka

      Public
      Python
      •
      Apache License 2.0
      •4•8•25•0•Updated Mar 31, 2025Mar 31, 2025

    • MG_NICDhalf

      Public
      NICD half life from Western blots (Meijer)
      R
      •0•0•0•0•Updated Mar 31, 2025Mar 31, 2025

    • m6a_arabidopsis_autoimmunity

      Public
      Python
      •0•0•0•0•Updated Feb 17, 2025Feb 17, 2025

    • MG_Methyl28S

      Public
      28S methylation in disease in Drosophila (McGurk)
      HTML
      •0•0•0•0•Updated Jan 28, 2025Jan 28, 2025

    • RNAit

      Public
      Reimplementation of RNAit RNAi primer selection tool
      HTML
      •
      MIT License
      •2•0•0•0•Updated Jan 27, 2025Jan 27, 2025

    • MG_yeast_Tfe

      Public
      Tfe1 and Tfe2 toxin expression in S. cerevisiae RNA-seq (Katharina Trunk)
      R
      •0•0•0•0•Updated Jan 21, 2025Jan 21, 2025

    • MG_NCCProt

      Public
      Nascent Chromatin Capture Proteomics (Alabert)
      R
      •0•0•0•0•Updated Jan 14, 2025Jan 14, 2025

    • PT_interogate_m6anet_results

      Public
      Determine exon location of predicted m6a methylation sites
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 9, 2025Jan 9, 2025