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    26 repositories

    • sge-pipeline

      Public
      Pipeline for processing and analyzing SGE data
      Python
      •
      MIT License
      •0•1•0•0•Updated Mar 2, 2026Mar 2, 2026

    • IGVF-cvfg-pillar-project

      Public
      IGVF coding variants focus group flagship manuscript: A scalable approach to resolving variants of uncertain significance
      Jupyter Notebook
      •0•4•0•0•Updated Feb 15, 2026Feb 15, 2026

    • bbi-sci

      Public
      Nextflow
      •
      Other
      •5•8•11•0•Updated Jan 17, 2026Jan 17, 2026

    • CSHL

      Public
      Course Materials for CSHL Computational Biology Course
      R
      •3•1•0•0•Updated Dec 4, 2025Dec 4, 2025

    • bbi-dmux

      Public
      Python
      •
      Other
      •6•8•14•0•Updated Nov 19, 2025Nov 19, 2025

    • vep-playground

      Public
      Code for variant effect prediction and other machine learning exploration
      Jupyter Notebook
      •0•0•0•0•Updated Nov 12, 2025Nov 12, 2025

    • SASC

      Public
      Seattle Area Single-Cell (SASC) User Group Content
      HTML
      •0•7•0•0•Updated Oct 17, 2025Oct 17, 2025

    • ScaleRna

      Public
      ScaleBio Single-cell RNA Nextflow Workflow
      Python
      •
      Other
      •12•0•0•0•Updated Sep 10, 2025Sep 10, 2025

    • bbi-genome-data

      Public
      Download and prepare genome-related files for the processing pipelines.
      C
      •0•0•0•0•Updated Jun 30, 2025Jun 30, 2025

    • Useful-links-for-MAVEs-and-Variant-Interpretation

      Public
      Useful links for MAVEs and variant interpretation. From workshop: How to release data that clinicians can use
      0•0•0•0•Updated May 22, 2025May 22, 2025

    • docorm

      Public
      Document-oriented relational data persistence manager
      TypeScript
      •
      ISC License
      •2•0•0•0•Updated Apr 10, 2025Apr 10, 2025

    • reference-architectures

      Public
      2•0•0•0•Updated Feb 21, 2025Feb 21, 2025

    • schematools

      Public
      TypeScript
      •
      ISC License
      •1•0•0•0•Updated Jan 23, 2025Jan 23, 2025

    • bbi-sciatac-demux

      Public
      Python
      •
      Other
      •1•0•0•1•Updated Nov 4, 2024Nov 4, 2024

    • bbi-genetic-demux

      Public
      Genetic Demultiplexing pipeline using SoupOrCell software
      Nextflow
      •1•0•0•0•Updated Oct 4, 2024Oct 4, 2024

    • Temporal-Gastrulomics

      Public
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Sep 5, 2024Sep 5, 2024

    • redcap-support-core

      Public
      Shared core dependencies of REDCap Support Customization repos.
      Python
      •0•0•0•3•Updated Apr 12, 2024Apr 12, 2024

    • bbi-sciatac-analyze

      Public
      Jupyter Notebook
      •
      Other
      •1•0•7•1•Updated Apr 9, 2024Apr 9, 2024

    • bbi-sge

      Public
      BBI-SGE Pipeline /w Nextflow
      Python
      •
      Other
      •0•0•0•0•Updated Aug 30, 2022Aug 30, 2022

    • kittrack

      Public
      Compilation of dashboards created for BBI
      HTML
      •1•0•0•0•Updated Aug 1, 2022Aug 1, 2022

    • sge_nxfdemuxpipeline

      Public
      Nextflow
      •0•0•0•0•Updated Sep 22, 2021Sep 22, 2021

    • VUS-reinterpretation-with-MAVE

      Public
      Python
      •1•0•0•0•Updated Jul 27, 2021Jul 27, 2021

    • bbi-training-resources

      Public
      1•1•0•0•Updated Jun 23, 2021Jun 23, 2021

    • User-Tab

      Public
      JavaScript
      •
      BSD Zero Clause License
      •0•0•0•0•Updated Jun 14, 2021Jun 14, 2021

    • handle-vs-swab

      Public
      Comparable specimen collection from both ends of at-home mid-turbinate swabs
      R
      •0•0•0•0•Updated Jan 29, 2021Jan 29, 2021

    • saturationGenomeEditing_pipeline

      Public
      Python
      •6•0•0•0•Updated Jul 10, 2018Jul 10, 2018