Repositories list

• metpo

  Public
  Microbial ecophysiological trait and phenotype ontology

  Python

  •0•1•91•2•Updated Mar 9, 2026Mar 9, 2026

• minerva-requests

  Public
  JavaScript library for generating request information for interactions with a Minerva server.

  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •1•0•1•1•Updated Mar 3, 2026Mar 3, 2026

• bbop-graph-noctua

  Public
  A subclass of bbop-graph that layers on a complete annotation and graph editing model for the Noctua set of tools.

  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •3•0•0•1•Updated Mar 3, 2026Mar 3, 2026

• bbop-response-barista

  Public
  Response handler for dealing with the parsing of responses from Barista (enveloping Minerva).

  JavaScript

  •1•0•0•1•Updated Mar 3, 2026Mar 3, 2026

• berkeleybop.github.io

  Public
  Homepages for the Berkeley BOP.

  CSS

  •

  GNU General Public License v2.0

  •10•4•6•0•Updated Feb 18, 2026Feb 18, 2026

• bioportal_web_ui

  Public
  A Rails application for biological ontologies

  JavaScript

  •

  Other

  •42•0•0•0•Updated Feb 12, 2026Feb 12, 2026

• bbop-skills

  Public
  Best practices for BBOP group repos, intended for coding agents and humans

  monarchinitiativeai4curation

  monarchinitiativeai4curation

  Just

  •

  Other

  •2•10•0•1•Updated Dec 8, 2025Dec 8, 2025

• metpo-kgm-studio

  Public
  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•1•12•1•Updated Nov 24, 2025Nov 24, 2025

• metpo-kgm-copier

  Public
  Copier template for METPO/KG-Microbe ontology curation workflow

  Python

  •0•0•0•0•Updated Oct 2, 2025Oct 2, 2025

• contextualizer

  Public
  Python

  •3•1•3•1•Updated May 16, 2025May 16, 2025

• artificial-intelligence-ontology

  Public
  An ontology modeling classes and relationships describing deep learning networks, their component layers and activation functions, machine learning methods, as …

  deep-learningvocabularyontology+ 1

  deep-learningvocabularyontologyartificial-intelligence

  Jupyter Notebook

  •9•45•48•0•Updated Nov 12, 2024Nov 12, 2024

• bbop-manager-golr

  Public
  Manager for handling communication and callbacks with GOlr instances.

  HTML

  •

  BSD 3-Clause "New" or "Revised" License

  •1•0•6•1•Updated Jun 11, 2024Jun 11, 2024

• bbop-core

  Public
  A set of useful and common JavaScript functions to supplement other more basic utility libraries.

  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •1•0•1•0•Updated Jun 11, 2024Jun 11, 2024

• bbop-rest-manager

  Public
  The is the "new" version of the manager event model for BBOP systems.

  JavaScript

  •2•1•2•2•Updated Nov 27, 2023Nov 27, 2023

• bero

  Public
  Biological and Environmental Research Ontology (BERO)

  Makefile

  •

  MIT License

  •0•1•1•0•Updated Mar 28, 2023Mar 28, 2023

• lsi.sh

  Public
  MegaCLI script to configure and monitor LSI raid cards.

  megaraidlsi+ 2

  megaraidlsimegaclimegaraid

  Shell

  •

  Creative Commons Attribution Share Alike 4.0 International

  •6•14•0•0•Updated Jan 13, 2023Jan 13, 2023

• kgviz-model

  Public
  Schema for configurations / stylesheets for visualizing ontology and KGs

  visualizationjavascriptgraphviz+ 9

  visualizationjavascriptgraphviznodeontologystylesheetkgsontology-visualizationobographslinkml+ 2

  Python

  •0•4•1•0•Updated Aug 17, 2022Aug 17, 2022

• bbop-graph

  Public
  General purpose (mathematical) graph library in JavaScript.

  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •4•2•3•0•Updated Aug 10, 2022Aug 10, 2022

• .github

  Public
  0•0•0•0•Updated May 12, 2022May 12, 2022

• bbop-manager-minerva

  Public
  Manager for handling communication and callbacks with Minerva instances (mediated by Barista).

  JavaScript

  •1•0•1•1•Updated Jun 4, 2021Jun 4, 2021

• berkeleybop

  Public
  Generic repo for BBOP.

  BSD 3-Clause "New" or "Revised" License

  •0•0•2•0•Updated Apr 24, 2019Apr 24, 2019

• bbop-manager-sparql

  Public
  Manager for handling communication and callbacks with a SPARQL endpoint; also allows for use of templates.

  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •1•0•0•0•Updated Jul 3, 2018Jul 3, 2018

• golr-schema

  Public
  Utility to generate a schema.xml from a yaml config file.

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •2•0•1•0•Updated Jan 29, 2018Jan 29, 2018

• class-expression

  Public
  A handling library for OWL-style class expressions in JavaScript.

  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•2•0•Updated Oct 1, 2017Oct 1, 2017

• galaxy-monarch-curl

  Public
  Shell

  •

  BSD 3-Clause "New" or "Revised" License

  •1•0•0•0•Updated Dec 5, 2016Dec 5, 2016

• apollo-log-scraper

  Public
  JavaScript

  •1•0•0•0•Updated Nov 23, 2016Nov 23, 2016

• bbop-response-golr

  Public
  Response type and API for handling the returns from a GOlr instance in a standard way.

  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •1•0•0•0•Updated Nov 1, 2016Nov 1, 2016

• obo-models

  Public
  Models for the "generic" Noctua.

  Perl

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Oct 27, 2016Oct 27, 2016

• golr-conf

  Public
  GOlr configuration file handling and API.

  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Oct 21, 2016Oct 21, 2016

• bbop-rest-response

  Public
  Generic handler for dealing with the gross parsing and handling of responses from a REST service.

  JavaScript

  •1•0•0•0•Updated Oct 21, 2016Oct 21, 2016