Repositories list

• siWalk

  Public
  Python

  •

  MIT License

  •1•0•0•0•Updated Mar 10, 2026Mar 10, 2026

• Identification-Tracking-Cows

  Public
  This project provides a complete pipeline for detecting, tracking, identifying, and analyzing cows in videos. It is designed to support behavioral research and …

  Jupyter Notebook

  •0•0•0•0•Updated Feb 16, 2026Feb 16, 2026

• AnnotationManualCorrection

  Public
  Python

  •0•0•0•0•Updated Feb 16, 2026Feb 16, 2026

• cow-detection-and-identification-model

  Public
  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Feb 16, 2026Feb 16, 2026

• TOUCAN

  Public
  Supervised learning for fungal BGC discovery

  Python

  •

  MIT License

  •0•6•2•12•Updated Nov 11, 2025Nov 11, 2025

• Forecasting_App

  Public
  Python

  •0•0•0•0•Updated Nov 5, 2025Nov 5, 2025

• MultiPatchFormer

  Public
  Official Implementation of the MultiPatchFormer: A multiscale model for multivariate time series forecasting

  Python

  •6•14•1•0•Updated Oct 22, 2025Oct 22, 2025

• Bi-iGRU

  Public
  A bi-directional cross-channel RNN model for time-series forecasting of dairy production

  Python

  •0•0•0•0•Updated Sep 17, 2025Sep 17, 2025

• OLMS

  Public
  OptimalLocalMinSearch

  Python

  •0•0•0•0•Updated Aug 15, 2025Aug 15, 2025

• backprojector

  Public
  MATLAB

  •0•0•0•0•Updated Jun 25, 2025Jun 25, 2025

• fangio

  Public
  Adds movement indices to behavior experiment videos (matlab)

  MATLAB

  •0•0•0•0•Updated Jun 25, 2025Jun 25, 2025

• matrid

  Public
  manual tracking and identification software (matlab)

  MATLAB

  •0•0•0•0•Updated Jun 25, 2025Jun 25, 2025

• Caribou

  Public
  Alignment-free bacterial identification and classification in metagenomics sequencing data using machine learning

  machine-learningalignment-freebacterial-genomes+ 2

  machine-learningalignment-freebacterial-genomesclassification-modelsbacteria-classification

  Python

  •

  MIT License

  •1•3•0•0•Updated May 19, 2025May 19, 2025

• ArcticFox

  Public
  Python

  •

  Other

  •1•0•0•0•Updated Mar 9, 2025Mar 9, 2025

• mytest

  Public
  0•0•0•0•Updated Feb 25, 2025Feb 25, 2025

• UL33

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jan 7, 2025Jan 7, 2025

• KmerSignificanceScore

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jan 6, 2025Jan 6, 2025

• ontos

  Public
  Ruby

  •0•0•0•0•Updated Dec 19, 2024Dec 19, 2024

• dairy_biomarkers

  Public
  Ensemble supervised learning approach to discover discriminative biomarkers that predict dairy cow welfare.

  Python

  •

  MIT License

  •0•0•0•0•Updated Aug 20, 2024Aug 20, 2024

• Bioinfo-Workshops

  Public
  Bioinfo-Workshops hosts hands-on tutorials and exercises covering NGS analysis, R programming, Linux basics, and more in bioinformatics.

  HTML

  •0•0•0•0•Updated Jun 18, 2024Jun 18, 2024

• synchronization-of-w-videos-

  Public
  Jupyter Notebook

  •1•0•0•0•Updated Jun 18, 2024Jun 18, 2024

• Canadian-cropland-dataset-github

  Public
  This repository houses a novel patch-based dataset compiled using optical satellite images of Canadian agricultural croplands retrieved from Sentinel-2.

  Python

  •

  MIT License

  •7•45•1•0•Updated Jul 17, 2023Jul 17, 2023

• the-canadian-cropland-dataset-website

  Public
  Ruby

  •

  MIT License

  •0•0•0•0•Updated Jul 14, 2023Jul 14, 2023

• methylc-seq

  Public
  0•0•0•0•Updated Jun 6, 2023Jun 6, 2023

• KEVOLVE

  Public
  Method based on genetic algorithm that uses machine learning to extract a bag of minimal sets of features maximizing a given performance threshold

  Jupyter Notebook

  •

  MIT License

  •3•3•0•0•Updated Apr 18, 2023Apr 18, 2023

• CASTOR_KRFE

  Public
  Alignment-free method to identify and analyse discriminant genomic subsequences within pathogen sequences

  machine-learningsvmfeature-extraction+ 8

  machine-learningsvmfeature-extractionalignment-freecastortaxonomic-classificationkmersrfevirus-classificationcastor-krfe+ 1

  Python

  •

  MIT License

  •4•10•0•0•Updated Feb 26, 2023Feb 26, 2023

• welfare_ai_2.0

  Public
  Jupyter Notebook

  •

  MIT License

  •1•0•0•0•Updated Oct 5, 2022Oct 5, 2022

• evoVGM

  Public
  Evolutionary-based Variational Generative Model using Multiple Sequence Alignments

  Python

  •

  MIT License

  •1•2•0•0•Updated Sep 9, 2022Sep 9, 2022

• evoVGM_Exp

  Public
  Python

  •1•0•0•0•Updated Jul 12, 2022Jul 12, 2022

• RL-bgc-components

  Public
  Reinforcement learning for improving components in fungal BGCs

  Python

  •

  MIT License

  •0•5•0•0•Updated May 3, 2022May 3, 2022