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@calacademy-research California Academy of Sciences, Institute for Biodiversity Science & Sustainability

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    67 repositories

    • picturae_csv_parser

      Public
      stand alone program , used to QC csvs ready for specify import from picturae, nfn and digileap supplied data
      Python
      •0•2•0•0•Updated Sep 11, 2026Sep 11, 2026

    • LabelLlama_CAS

      Public
      Extract information from labels on images of museum specimens. Custom modifications for the California Academy of Sciences..
      Python
      •
      MIT License
      •1•0•0•0•Updated Sep 11, 2026Sep 11, 2026

    • galapagos_island_mapper

      Public
      R
      •1•1•0•0•Updated Sep 11, 2026Sep 11, 2026

    • web-asset-importer

      Public
      Image client used in conjunction with web-asset-server to process images/data into image server, and specify databases.
      Python
      •2•1•1•2•Updated Sep 10, 2026Sep 10, 2026

    • antweb

      Public
      AntWeb is the world's largest online database of images, specimen records, and natural history information on ants. It is community driven and open to contribut…
      Java
      •5•9•2•9•Updated Sep 10, 2026Sep 10, 2026

    • specify7

      Public
      An open-source platform for managing biological and geological collections.
      TypeScript
      •
      GNU General Public License v3.0
      •51•0•0•0•Updated Sep 5, 2026Sep 5, 2026

    • cas-web-asset-server

      Public
      Sample attachment server implementation for Specify.
      Python
      •18•2•0•0•Updated Sep 1, 2026Sep 1, 2026

    • load_analyzer

      Public
      Python
      •
      GNU General Public License v3.0
      •1•1•1•0•Updated Jul 18, 2026Jul 18, 2026

    • antcat

      Public
      World Catalog of Ants
      Ruby
      •9•21•0•4•Updated Jul 17, 2026Jul 17, 2026

    • CASES

      Public
      Python
      •0•1•0•2•Updated Jul 8, 2026Jul 8, 2026

    • disk_usage_reports

      Public
      Python
      •0•0•0•0•Updated Jul 1, 2026Jul 1, 2026

    • COMB

      Public
      C O M B
      R
      •
      Apache License 2.0
      •6•5•18•1•Updated May 20, 2026May 20, 2026

    • specify7-fixes

      Public
      An open-source platform for managing biological and geological collections.
      TypeScript
      •
      GNU General Public License v3.0
      •51•0•0•0•Updated Apr 10, 2026Apr 10, 2026

    • collections-tools

      Public
      Collection management tools for CAS
      Python
      •0•0•0•0•Updated Apr 1, 2026Apr 1, 2026

    • expedition-clustering

      Public
      Expedition Clustering groups California Academy of Sciences botany specimens into inferred expeditions using a reproducible spatiotemporal DBSCAN pipeline.
      Jupyter Notebook
      •1•0•0•0•Updated Mar 1, 2026Mar 1, 2026

    • assembly_etc

      Public
      Shell
      •
      MIT License
      •0•3•0•0•Updated Feb 6, 2026Feb 6, 2026

    • Basic-R

      Public
      A one script introduction to R from scratch
      R
      •0•1•0•0•Updated Dec 4, 2025Dec 4, 2025

    • img_getter

      Public
      script that uses s3 protocols to gather images using rel paths
      Python
      •0•0•0•0•Updated Nov 21, 2025Nov 21, 2025

    • label_reconciliations

      Public
      Code for reconciling multiple transcriptions for a label
      Python
      •
      MIT License
      •11•0•0•0•Updated Oct 14, 2025Oct 14, 2025

    • cas_bot_georeference

      Public
      The python GeoReferencer which defines a BELS --> Geolocate --> GVS pipeline to assign lat/long coordinates + error radii.
      Python
      •0•1•0•0•Updated Sep 12, 2025Sep 12, 2025

    • cas_grouper

      Public
      A forked version of grouper from BRITorg. Reduces unique localities via fuzzy matching and normalization.
      Python
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Aug 14, 2025Aug 14, 2025

    • collections-explorer-prototype

      Public
      TypeScript
      •1•2•0•0•Updated Aug 5, 2025Aug 5, 2025

    • awesome-specify

      Public
      A list of awesome Specify integrations, software, and resources developed by the community.
      4•0•0•0•Updated Jun 16, 2025Jun 16, 2025

    • bels_dockerized

      Public
      Biodiversity Enhanced Location Services
      Python
      •
      Apache License 2.0
      •2•0•0•0•Updated May 7, 2025May 7, 2025

    • metadata_tools

      Public
      utility package for writing and reading image metadata
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 28, 2025Apr 28, 2025

    • citation-tracer

      Public
      Python
      •1•0•0•0•Updated Apr 18, 2025Apr 18, 2025

    • herpetology_migration_template

      Public
      Python
      •0•0•0•0•Updated Apr 7, 2025Apr 7, 2025

    • explorer-core

      Public
      Collections explorer core with API
      Python
      •
      GNU General Public License v3.0
      •0•4•0•0•Updated Mar 5, 2025Mar 5, 2025

    • explorer-frontend-prototype

      Public
      TypeScript
      •0•0•0•0•Updated Jan 14, 2025Jan 14, 2025

    • webportal-installer-FLMNH

      Public
      The Specify Web Portal
      JavaScript
      •
      GNU General Public License v2.0
      •13•0•0•0•Updated Dec 12, 2024Dec 12, 2024
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