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    46 repositories

    • q2-qsip2

      Public
      A QIIME 2 plugin for the analysis of qSIP data.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•0•0•Updated Mar 5, 2026Mar 5, 2026

    • caplab-website-2

      Public
      Astro
      •
      MIT License
      •1•0•0•1•Updated Feb 4, 2026Feb 4, 2026

    • plugin-template

      Public
      Template to help you create your new QIIME 2 plugin. 🚀
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •5•1•7•1•Updated Jan 8, 2026Jan 8, 2026

    • genome-sampler

      Public
      genome-sampler: sample viral genomes across time of isolation, location of isolation, and genome divergence.
      hacktoberfest
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •10•6•18•1•Updated Nov 24, 2025Nov 24, 2025

    • amf-tutorial

      Public
      Test of AMF tutorial
      Makefile
      •4•0•0•0•Updated Nov 24, 2025Nov 24, 2025

    • gut-to-soil-manuscript-figures

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•1•Updated Nov 24, 2025Nov 24, 2025

    • q2view-visualizations

      Public
      Hosting of visualizations for the QIIME 2 View gallery.
      0•0•0•0•Updated Oct 30, 2025Oct 30, 2025

    • parsl-configs

      Public
      0•0•0•0•Updated Jul 22, 2025Jul 22, 2025

    • q2-boots-book

      Public archive
      q2-boots documentation
      TeX
      •1•0•0•0•Updated Jun 18, 2025Jun 18, 2025

    • caporaso-lab.github.io

      Public
      Lab website
      HTML
      •
      BSD 3-Clause "New" or "Revised" License
      •20•1•0•0•Updated Apr 14, 2025Apr 14, 2025

    • .github

      Public
      0•0•0•0•Updated Jan 22, 2025Jan 22, 2025

    • q2-cat-book

      Public
      TeX
      •3•0•2•0•Updated Dec 19, 2024Dec 19, 2024

    • gut-to-soil-ridgeline-plots

      Public
      Svelte
      •0•0•1•0•Updated Nov 5, 2024Nov 5, 2024

    • gut-to-soil-dvc

      Public archive
      DVC registry for gut-to-soil paper
      0•0•0•0•Updated Oct 25, 2024Oct 25, 2024

    • q2-dwq2

      Public
      Educational plugin for use with *Developing with QIIME 2* (DWQ2).
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Sep 30, 2024Sep 30, 2024

    • sourcetracker2

      Public
      SourceTracker2
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •48•86•50•4•Updated Jul 10, 2024Jul 10, 2024

    • qiime2.org-home

      Public archive
      Prototype for updated qiime2.org homepage.
      0•0•0•0•Updated May 6, 2024May 6, 2024

    • q2-books

      Public
      A prototype collection of JupyterBooks documenting QIIME 2
      TeX
      •
      BSD 3-Clause "New" or "Revised" License
      •0•5•2•0•Updated Apr 8, 2024Apr 8, 2024

    • humanure-paper1

      Public
      0•0•0•0•Updated Nov 20, 2023Nov 20, 2023

    • exmp-paper1

      Public
      Data supporting the NAU EXMP-1 and EXMP-2 (EXercise Microbiome Projects)
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•0•0•Updated Aug 24, 2022Aug 24, 2022

    • pretrained-feature-classifiers

      Public
      Shell
      •
      BSD 3-Clause "New" or "Revised" License
      •4•3•6•0•Updated Jun 9, 2021Jun 9, 2021

    • covid-ci

      Public
      Continuous deployment of covid analyses using Concourse CI
      hacktoberfest
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•1•0•0•Updated Apr 15, 2021Apr 15, 2021

    • gsheets-resource

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Mar 4, 2021Mar 4, 2021

    • simple-remote-directory-resource

      Public
      Concourse resource for handling remote directories
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•0•0•Updated Mar 4, 2021Mar 4, 2021

    • docker-galaxy-stable

      Public
      :whale::bar_chart::books: Docker Images tracking the stable Galaxy releases.
      Shell
      •
      MIT License
      •139•0•0•0•Updated Feb 17, 2021Feb 17, 2021

    • teaching-website-source

      Public
      Sphinx source for my teaching website
      Python
      •0•0•0•0•Updated Jan 13, 2021Jan 13, 2021

    • az-covid-1

      Public
      Scripts supporting an initial investigation of SARS-CoV-2 genomes from Arizona
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jul 7, 2020Jul 7, 2020

    • q2-phylogenomics

      Public archive
      Phylogenomics toolkit and pipelines
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•2•0•Updated Apr 15, 2020Apr 15, 2020

    • tax-credit-data

      Public archive
      raw data from tax-credit project
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •6•14•0•0•Updated Sep 19, 2019Sep 19, 2019

    • ecuador-leptospira

      Public archive
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Aug 16, 2019Aug 16, 2019