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    • q2-qsip2

      Public
      A QIIME 2 plugin for the analysis of qSIP data.
      Python
      BSD 3-Clause "New" or "Revised" License
      1100Updated Mar 5, 2026Mar 5, 2026
    • Astro
      MIT License
      1001Updated Feb 4, 2026Feb 4, 2026
    • Template to help you create your new QIIME 2 plugin. 🚀
      Python
      BSD 3-Clause "New" or "Revised" License
      5171Updated Jan 8, 2026Jan 8, 2026
    • genome-sampler: sample viral genomes across time of isolation, location of isolation, and genome divergence.
      Python
      BSD 3-Clause "New" or "Revised" License
      106181Updated Nov 24, 2025Nov 24, 2025
    • Test of AMF tutorial
      Makefile
      4000Updated Nov 24, 2025Nov 24, 2025
    • Jupyter Notebook
      BSD 3-Clause "New" or "Revised" License
      1001Updated Nov 24, 2025Nov 24, 2025
    • Hosting of visualizations for the QIIME 2 View gallery.
      0000Updated Oct 30, 2025Oct 30, 2025
    • 0000Updated Jul 22, 2025Jul 22, 2025
    • q2-boots-book

      Public archive
      q2-boots documentation
      TeX
      1000Updated Jun 18, 2025Jun 18, 2025
    • Lab website
      HTML
      BSD 3-Clause "New" or "Revised" License
      20100Updated Apr 14, 2025Apr 14, 2025
    • .github

      Public
      0000Updated Jan 22, 2025Jan 22, 2025
    • TeX
      3020Updated Dec 19, 2024Dec 19, 2024
    • Svelte
      0010Updated Nov 5, 2024Nov 5, 2024
    • gut-to-soil-dvc

      Public archive
      DVC registry for gut-to-soil paper
      0000Updated Oct 25, 2024Oct 25, 2024
    • q2-dwq2

      Public
      Educational plugin for use with *Developing with QIIME 2* (DWQ2).
      Python
      BSD 3-Clause "New" or "Revised" License
      1000Updated Sep 30, 2024Sep 30, 2024
    • SourceTracker2
      Python
      BSD 3-Clause "New" or "Revised" License
      4886504Updated Jul 10, 2024Jul 10, 2024
    • qiime2.org-home

      Public archive
      Prototype for updated qiime2.org homepage.
      0000Updated May 6, 2024May 6, 2024
    • q2-books

      Public
      A prototype collection of JupyterBooks documenting QIIME 2
      TeX
      BSD 3-Clause "New" or "Revised" License
      0520Updated Apr 8, 2024Apr 8, 2024
    • 0000Updated Nov 20, 2023Nov 20, 2023
    • Data supporting the NAU EXMP-1 and EXMP-2 (EXercise Microbiome Projects)
      Jupyter Notebook
      BSD 3-Clause "New" or "Revised" License
      1100Updated Aug 24, 2022Aug 24, 2022
    • Shell
      BSD 3-Clause "New" or "Revised" License
      4360Updated Jun 9, 2021Jun 9, 2021
    • covid-ci

      Public
      Continuous deployment of covid analyses using Concourse CI
      Python
      BSD 3-Clause "New" or "Revised" License
      2100Updated Apr 15, 2021Apr 15, 2021
    • Python
      BSD 3-Clause "New" or "Revised" License
      1000Updated Mar 4, 2021Mar 4, 2021
    • Concourse resource for handling remote directories
      Python
      BSD 3-Clause "New" or "Revised" License
      2000Updated Mar 4, 2021Mar 4, 2021
    • :whale::bar_chart::books: Docker Images tracking the stable Galaxy releases.
      Shell
      MIT License
      139000Updated Feb 17, 2021Feb 17, 2021
    • Sphinx source for my teaching website
      Python
      0000Updated Jan 13, 2021Jan 13, 2021
    • Scripts supporting an initial investigation of SARS-CoV-2 genomes from Arizona
      Python
      BSD 3-Clause "New" or "Revised" License
      0000Updated Jul 7, 2020Jul 7, 2020
    • q2-phylogenomics

      Public archive
      Phylogenomics toolkit and pipelines
      Python
      BSD 3-Clause "New" or "Revised" License
      1020Updated Apr 15, 2020Apr 15, 2020
    • tax-credit-data

      Public archive
      raw data from tax-credit project
      Jupyter Notebook
      BSD 3-Clause "New" or "Revised" License
      61400Updated Sep 19, 2019Sep 19, 2019
    • ecuador-leptospira

      Public archive
      BSD 3-Clause "New" or "Revised" License
      0100Updated Aug 16, 2019Aug 16, 2019