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    16 repositories

    • mras

      Public
      Python
      •
      Apache License 2.0
      •0•1•1•0•Updated Feb 13, 2026Feb 13, 2026

    • ARACNe-AP

      Public
      Network Reverse Engineering through AP inference of Mutual Information
      Java
      •
      Other
      •27•0•0•0•Updated Feb 13, 2026Feb 13, 2026

    • DeltaSplice

      Public
      A neural network model to predict splice site usage and splicing-altering mutations
      Python
      •
      Other
      •1•15•3•0•Updated Jul 24, 2025Jul 24, 2025

    • czplib

      Public
      Chaolin Zhang lab perl library
      Perl
      •
      GNU General Public License v3.0
      •8•6•2•1•Updated May 14, 2025May 14, 2025

    • PlotPWM.jl

      Public
      Plot position weight matrices (PWM)
      dnarnaprotein-rna-interactions
      dnarnaprotein-rna-interactionsbinding-sitesmotifsprotein-dna-interactionsrna-binding-proteinstfbstranscription-factor-binding-siteposition-weight-matrix
      Julia
      •
      MIT License
      •0•1•0•2•Updated Mar 13, 2025Mar 13, 2025

    • quantas

      Public
      Perl
      •1•0•1•0•Updated Jun 10, 2024Jun 10, 2024

    • ctk

      Public
      CLIP Tool Kit (CTK)
      DM
      •16•21•5•0•Updated Apr 28, 2024Apr 28, 2024

    • mCross

      Public
      A computational tool for de novo RBP motif discovery
      Perl
      •
      MIT License
      •0•0•1•0•Updated Apr 28, 2024Apr 28, 2024

    • PxR3D

      Public
      Structural based prediction of protein-RNA photo-crosslinking sites
      R
      •
      Apache License 2.0
      •2•1•0•0•Updated Feb 3, 2024Feb 3, 2024

    • rush

      Public
      Scripts used for RUSH screens
      Python
      •
      Apache License 2.0
      •1•1•0•0•Updated Dec 18, 2023Dec 18, 2023

    • olego

      Public
      C
      •
      GNU General Public License v3.0
      •3•9•5•0•Updated Aug 16, 2022Aug 16, 2022

    • splicescope

      Public
      Determine cellular states using splicing profiles
      R
      •
      Other
      •0•1•0•0•Updated Nov 12, 2018Nov 12, 2018

    • mrin

      Public
      Perl
      •
      GNU General Public License v3.0
      •2•5•2•0•Updated Nov 12, 2018Nov 12, 2018

    • regexpmatch

      Public
      C++
      •0•0•0•0•Updated Jun 22, 2016Jun 22, 2016

    • patternmatch

      Public
      C++
      •0•0•0•0•Updated Jun 22, 2016Jun 22, 2016

    • mcarts

      Public
      Perl
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Jun 22, 2016Jun 22, 2016