Centre for Infectious Diseases and Microbiology - Public Health

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13 repositories

ggmapinset
Public
Add zoomed inset panels to your ggplot maps
ggplot2 geospatial data-visualization
ggplot2 geospatial data-visualization ggplot-extension
R
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Other
•0•38•3•0•Updated Mar 23, 2026Mar 23, 2026
ggautomap
Public
Create ggplot maps from a column of place names
ggplot2 geospatial data-visualization
ggplot2 geospatial data-visualization ggplot-extension
R
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Other
•1•23•3•2•Updated Mar 23, 2026Mar 23, 2026
nswgeo
Public
Geospatial data and maps for New South Wales, Australia
r geospatial geospatial-data
r geospatial geospatial-data
R
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Other
•2•3•1•0•Updated Mar 19, 2026Mar 19, 2026
cartographer
Public
Turn place names into map data
r spatial
r spatial
R
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Other
•0•4•1•0•Updated Mar 19, 2026Mar 19, 2026
cidm-ph.r-universe.dev
Public
0•0•0•0•Updated Mar 19, 2026Mar 19, 2026
jentre
Public
NCBI Entrez API client in R
genomics api-client entrez
genomics api-client entrez
R
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Other
•0•0•0•0•Updated Mar 3, 2026Mar 3, 2026
phylepic
Public
Epidemic curve + phylogenomic tree
r genomics public-health
r genomics public-health genomics-visualization
R
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Other
•1•1•0•0•Updated Sep 12, 2025Sep 12, 2025
mycoplasma-tngs-mrmp-paper
Public
0•0•0•0•Updated Aug 12, 2025Aug 12, 2025
pertpipe
Public
Pipeline for full analysis of Bordetella pertussis, particularly for the detection of macrolide resistance & vaccine antigen mutations
Python
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GNU General Public License v3.0
•1•0•0•0•Updated Feb 4, 2025Feb 4, 2025
obsim
Public
Outbreak simulation based on a branching process
simulation public-health outbreak
simulation public-health outbreak
Rust
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Apache License 2.0
•0•1•0•4•Updated Feb 3, 2025Feb 3, 2025
HiRes
Public
Pipeline to assess resistance markers in Haemophilus influenzae for betalactamases, cephalosporins and fluoroquinolones
Python
•
GNU General Public License v3.0
•0•1•0•0•Updated Dec 24, 2024Dec 24, 2024
STECode
Public
Virulence barcoding for STEC
Python
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GNU General Public License v3.0
•0•1•0•0•Updated Dec 20, 2024Dec 20, 2024
distmat
Public
Distance matrix data types and file formats for Rust
bioinformatics data-structures distance-matrix
bioinformatics data-structures distance-matrix
Rust
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Apache License 2.0
•0•0•0•1•Updated Nov 11, 2024Nov 11, 2024