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@clingen-data-model ClinGen Data Platform

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    94 repositories

    • gpm

      Public
      ClinGen Expert Panel Management System
      PHP
      •2•3•2•19•Updated Feb 25, 2026Feb 25, 2026

    • clingen-gene-tracker

      Public
      Web based gene curation workflow tracking application
      PHP
      •1•3•12•20•Updated Feb 24, 2026Feb 24, 2026

    • cur-ai-ss

      Public
      Curator AI Assistant
      Python
      •
      MIT License
      •0•2•12•1•Updated Feb 24, 2026Feb 24, 2026

    • community-curation

      Public
      PHP
      •0•3•0•10•Updated Feb 24, 2026Feb 24, 2026

    • clinvar-ep-reports

      Public
      Python script to generate ClinGen Expert Panel Excel reports from ClinVar FTP files.
      Python
      •0•0•1•0•Updated Feb 24, 2026Feb 24, 2026

    • clingen-architecture

      Public
      Records of design and decisions for ClinGen across activities
      Creative Commons Zero v1.0 Universal
      •0•1•0•0•Updated Feb 19, 2026Feb 19, 2026

    • website-clinicalgenome-search

      Public
      SEARCH V4 :: The aim of the project is to integrate ClinGen's internal data services and public external data services around a common user experience to ensure…
      phplaravelcomposervariantsgenes
      PHP
      •3•4•0•20•Updated Feb 13, 2026Feb 13, 2026

    • clinvar-ingest-bq-tools

      Public
      ClinVar ingest BiqQuery tools
      TypeScript
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Feb 10, 2026Feb 10, 2026

    • genegraph-base

      Public
      App for downloading supporting data files for Genegraph apps and advertising their availability on the Data Exchange.
      Clojure
      •
      MIT License
      •0•0•0•0•Updated Feb 6, 2026Feb 6, 2026

    • genegraph-framework

      Public
      Framework for stream based processing of events, with public API access built in
      Clojure
      •
      MIT License
      •0•0•3•0•Updated Feb 6, 2026Feb 6, 2026

    • genegraph-api

      Public
      GraphQL API representation of Genegraph managed data
      Clojure
      •
      MIT License
      •0•0•6•0•Updated Feb 4, 2026Feb 4, 2026

    • clinvar-gk-python

      Public
      Project for reading and normalizing ClinVar variants into GA4GH GKS forms
      Jupyter Notebook
      •
      MIT License
      •0•0•5•0•Updated Feb 3, 2026Feb 3, 2026

    • genegraph-gene-validity

      Public
      Representation of ClinGen Gene Validity data using Genegraph
      Clojure
      •
      MIT License
      •0•0•2•0•Updated Feb 2, 2026Feb 2, 2026

    • SEPIO-ontology

      Public
      Ontology for representing scientific evidence and provenance information
      10•1•0•0•Updated Feb 2, 2026Feb 2, 2026

    • clinvar-this

      Public
      ClinVar Submission API Made Easy
      Python
      •
      MIT License
      •2•0•7•1•Updated Jan 25, 2026Jan 25, 2026

    • data-exchange-shared-json

      Public
      JSON schema utilized to share data from the curation interfaces into the Data Exchange. CONTAINS GENE EXPRESS JSON DATA
      0•1•2•0•Updated Jan 24, 2026Jan 24, 2026

    • clinvar-gks

      Public
      dataform project with pipelines to transform clinvar to gks standards
      Shell
      •
      MIT License
      •0•0•4•0•Updated Jan 23, 2026Jan 23, 2026

    • cgwi-php-helm

      Public
      Helm chart for ClinGen Workflow Infrastructure php apps
      Go Template
      •0•0•1•0•Updated Jan 22, 2026Jan 22, 2026

    • kafka-topic-appender

      Public
      Application for copying events from one Kafka topic to another.
      Clojure
      •
      MIT License
      •0•0•0•0•Updated Jan 14, 2026Jan 14, 2026

    • genegraph-gene-validity-sepio

      Public
      Transform and publish the Gene Validity SEPIO model to the data exchange and storage
      Clojure
      •
      MIT License
      •0•0•12•0•Updated Dec 18, 2025Dec 18, 2025

    • cgwi-php

      Public
      ClinGen Workflow Infrastructure base PHP images
      Dockerfile
      •
      MIT License
      •0•0•2•0•Updated Dec 13, 2025Dec 13, 2025

    • clinvar-ftp-watcher

      Public
      Cloud Function for detecting new files on the clinvar ftp site
      Clojure
      •0•1•0•0•Updated Dec 8, 2025Dec 8, 2025

    • genegraph-frontend

      Public
      Frontend for genegraph-api
      Clojure
      •0•0•0•0•Updated Nov 25, 2025Nov 25, 2025

    • architecture

      Public
      HCL
      •0•2•17•3•Updated Nov 4, 2025Nov 4, 2025

    • clinvar-submitter

      Public
      Application for transforming messages formatted according to the data model for ClinVar submission
      Clojure
      •
      Eclipse Public License 1.0
      •0•1•0•1•Updated Nov 3, 2025Nov 3, 2025

    • genegraph-snapshot

      Public
      Snapshot generator leveraging Genegraph
      Clojure
      •
      MIT License
      •0•0•1•0•Updated Oct 7, 2025Oct 7, 2025

    • clinvar-ingest

      Public
      Python
      •
      Apache License 2.0
      •0•3•18•0•Updated Sep 5, 2025Sep 5, 2025

    • clinvar-curation-input-tool

      Public
      Chrome extension to allow curators to capture SCV data to a google sheet directly from clinvar website.
      HTML
      •
      Creative Commons Zero v1.0 Universal
      •0•0•1•0•Updated Aug 7, 2025Aug 7, 2025

    • genegraph-docs

      Public
      Public documentation for Genegraph Gene Validity data formats
      Clojure
      •
      MIT License
      •0•0•1•0•Updated May 27, 2025May 27, 2025

    • genegraph-data-model

      Public
      Schema and data model for Genegraph powered applications
      MIT License
      •0•0•0•0•Updated Apr 30, 2025Apr 30, 2025