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    60 repositories

    • testWorkflow

      Public
      Shell
      •
      Apache License 2.0
      •1•0•0•0•Updated Nov 5, 2025Nov 5, 2025

    • simple-notebook

      Public
      Jupyter Notebook
      •6•0•0•0•Updated Sep 19, 2025Sep 19, 2025

    • dockstore-whalesay2

      Public
      Sample dockstore whalesay repo for testing
      WDL
      •
      Apache License 2.0
      •11•0•0•0•Updated Sep 17, 2025Sep 17, 2025

    • chipimputation

      Public
      Genotype Imputation Pipeline for H3Africa
      Nextflow
      •
      MIT License
      •26•0•0•0•Updated Aug 19, 2025Aug 19, 2025

    • hello-wdl-workflow

      Public
      WDL
      •5•0•0•1•Updated Aug 12, 2025Aug 12, 2025

    • broad-prod-wgs-germline-snps-indels

      Public
      Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://github.com/gatk-workflows…
      WDL
      •
      BSD 3-Clause "New" or "Revised" License
      •26•0•0•0•Updated Aug 12, 2025Aug 12, 2025

    • empty-repo

      Public
      0•0•0•0•Updated Jun 17, 2025Jun 17, 2025

    • silly-workflow-language-interface

      Public
      Example implementation of support for a hypothetical language (SWL)
      Java
      •
      Apache License 2.0
      •2•0•0•1•Updated Mar 14, 2025Mar 14, 2025

    • wdl-humanwgs

      Public
      Testing for submodule compatibility
      WDL
      •
      BSD 3-Clause Clear License
      •50•0•0•0•Updated Jan 9, 2025Jan 9, 2025

    • dockstore-workflow-md5sum-unified

      Public
      Common Workflow Language
      •8•0•0•0•Updated Dec 9, 2024Dec 9, 2024

    • dockstore-tool-md5sum

      Public
      A very simple tool that just performs an md5sum
      Common Workflow Language
      •
      Apache License 2.0
      •15•0•0•0•Updated Dec 6, 2024Dec 6, 2024

    • mutect-tool

      Public
      Python
      •6•0•0•0•Updated Dec 5, 2024Dec 5, 2024

    • dockstore-tool-linux-sort

      Public
      From https://github.com/common-workflow-language/workflows
      Common Workflow Language
      •2•0•0•0•Updated Dec 5, 2024Dec 5, 2024

    • galaxy-workflow-dockstore-example-2

      Public
      6•0•0•0•Updated Dec 5, 2024Dec 5, 2024

    • workflow-dockstore-yml

      Public
      A repo that includes .dockstore.yml
      Common Workflow Language
      •
      Apache License 2.0
      •6•0•0•0•Updated Dec 5, 2024Dec 5, 2024

    • test-service

      Public
      3•0•0•0•Updated Aug 9, 2024Aug 9, 2024

    • rna-seq-star-deseq2

      Public
      RNA-seq workflow using STAR and DESeq2
      Python
      •
      MIT License
      •209•0•0•0•Updated Aug 1, 2024Aug 1, 2024

    • ampa-nf

      Public
      Fast automated prediction of protein antimicrobial regions
      Perl
      •6•0•0•0•Updated Jul 29, 2024Jul 29, 2024

    • large-sourcefiles

      Public
      Common Workflow Language
      •2•0•0•0•Updated Jul 9, 2024Jul 9, 2024

    • multi-entry

      Public
      A Dockstore repo with two tools, two workflows, and a .dockstore.yml. All entries on the main branch will register successfully, other branches generally tweak…
      Common Workflow Language
      •2•0•0•0•Updated Jun 10, 2024Jun 10, 2024

    • sourcefile-testing

      Public
      Jupyter Notebook
      •2•0•0•0•Updated Jun 3, 2024Jun 3, 2024

    • blank_testing

      Public
      0•0•0•0•Updated Aug 29, 2023Aug 29, 2023

    • wdl-common

      Public
      Supports https://github.com/dockstore-testing/wdl-humanwgs
      WDL
      •
      BSD 3-Clause Clear License
      •15•0•0•0•Updated Jul 31, 2023Jul 31, 2023

    • wdl-humanwgs-child

      Public
      Supports https://github.com/dockstore-testing/wdl-common/tree/main/wdl
      WDL
      •0•0•0•0•Updated Jul 31, 2023Jul 31, 2023

    • test-workflows-and-tools

      Public
      Common Workflow Language
      •11•0•0•0•Updated Jul 24, 2023Jul 24, 2023

    • tooltester-wes-testing

      Public
      Common Workflow Language
      •
      Apache License 2.0
      •3•0•0•0•Updated May 11, 2023May 11, 2023

    • one-workflow-many-ways

      Public
      Implementing bamqc over and over again
      Shell
      •
      MIT License
      •7•0•0•0•Updated May 8, 2023May 8, 2023

    • WES-testing-workflows

      Public
      Workflows for testing Dockstore CLI WES commands
      Apache License 2.0
      •0•0•0•0•Updated May 8, 2023May 8, 2023

    • rodent-of-unusual-size

      Public
      Test repo with amazing number of branches
      Java
      •
      Other
      •624•0•0•0•Updated Jan 31, 2023Jan 31, 2023

    • nextflow-broken

      Public
      A Nextflow workflow that is not valid in various ways.
      Nextflow
      •1•0•0•0•Updated Dec 27, 2022Dec 27, 2022